Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G355000.1 | Wheat | cytosol | 46.4 | 100.0 |
| TraesCS6B01G249300.1 | Wheat | mitochondrion | 35.59 | 76.7 |
| Zm00001d003148_P002 | Maize | mitochondrion | 32.43 | 74.23 |
| HORVU2Hr1G086230.3 | Barley | mitochondrion | 53.6 | 73.01 |
| EES12451 | Sorghum | mitochondrion | 33.33 | 71.84 |
| PGSC0003DMT400067603 | Potato | mitochondrion | 32.43 | 69.23 |
| Solyc08g006700.2.1 | Tomato | cytosol, mitochondrion | 22.52 | 68.49 |
| GSMUA_Achr4P05940_001 | Banana | cytosol | 28.38 | 67.02 |
| GSMUA_Achr4P12740_001 | Banana | cytosol | 27.93 | 65.96 |
| KRH05385 | Soybean | mitochondrion | 30.18 | 65.69 |
| KRH15632 | Soybean | mitochondrion | 30.18 | 65.69 |
| KRH61646 | Soybean | mitochondrion | 30.18 | 65.69 |
| AT5G10810.1 | Thale cress | cytosol | 30.18 | 61.47 |
| KRH52310 | Soybean | mitochondrion | 23.42 | 61.18 |
| CDY40120 | Canola | cytosol | 29.28 | 55.56 |
| Os04t0499200-01 | Rice | extracellular | 27.48 | 55.45 |
| VIT_04s0008g06800.t01 | Wine grape | plastid | 29.73 | 48.18 |
| CDX97062 | Canola | cytosol, plastid | 27.93 | 44.93 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G373500.1 | EnsemblPlantsGene:TraesCS2B01G373500 | Gene3D:3.30.2260.10 | GO:GO:0006139 | GO:GO:0006221 | GO:GO:0007049 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045747 | InterPro:EHR_sf | InterPro:Enh_rudimentary | InterPro:IPR035912 | PANTHER:PTHR12373 | PANTHER:PTHR12373:SF0 |
| PFAM:PD008105 | PFAM:PF01133 | SEG:seg | SUPFAM:SSF143875 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:-:532082161..532089486
Molecular Weight (calculated)
25105.2 Da
IEP (calculated)
10.556
GRAVY (calculated)
-0.340
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVVPGKNGS PPSGVVTISG IQYFGRTYFD RASPSLVFRK DSIFARKDLS LSGSGFSSLQ LFLGNPSSSQ ARPHHTIHRL CLRLHPPLRK GAAAGLSRVR
101: RPGAGDPCFC FRFRFRTESM AGRHTIVLVQ PSPNKASRTF MDFSSLNQAL DGICARYEKK IMDINPMARN FTYDITDLYN FIDGLADISA LVYDHQLQAF
201: LPYDRQWIKQ KMFQHLKNQA RQ
101: RPGAGDPCFC FRFRFRTESM AGRHTIVLVQ PSPNKASRTF MDFSSLNQAL DGICARYEKK IMDINPMARN FTYDITDLYN FIDGLADISA LVYDHQLQAF
201: LPYDRQWIKQ KMFQHLKNQA RQ
001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR
101: LKRIANGGR
Arabidopsis Description
ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.