Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G10810.1 | Thale cress | cytosol | 79.49 | 85.32 |
| KRH15632 | Soybean | mitochondrion | 64.96 | 74.51 |
| KRH05385 | Soybean | mitochondrion | 64.96 | 74.51 |
| GSMUA_Achr4P05940_001 | Banana | cytosol | 58.97 | 73.4 |
| Solyc08g006700.2.1 | Tomato | cytosol, mitochondrion | 45.3 | 72.6 |
| KRH61646 | Soybean | mitochondrion | 63.25 | 72.55 |
| GSMUA_Achr4P12740_001 | Banana | cytosol | 58.12 | 72.34 |
| PGSC0003DMT400067603 | Potato | mitochondrion | 63.25 | 71.15 |
| EES12451 | Sorghum | mitochondrion | 62.39 | 70.87 |
| Zm00001d051061_P001 | Maize | cytosol, mitochondrion | 60.68 | 68.93 |
| KRH52310 | Soybean | mitochondrion | 49.57 | 68.24 |
| Zm00001d003148_P002 | Maize | mitochondrion | 56.41 | 68.04 |
| HORVU6Hr1G056200.1 | Barley | mitochondrion | 59.83 | 67.96 |
| EES07137 | Sorghum | cytosol, mitochondrion | 59.83 | 67.96 |
| TraesCS6D01G202800.1 | Wheat | mitochondrion | 59.83 | 67.96 |
| TraesCS6B01G249300.1 | Wheat | mitochondrion | 59.83 | 67.96 |
| TraesCS6A01G219900.1 | Wheat | mitochondrion | 59.83 | 67.96 |
| CDX97062 | Canola | cytosol, plastid | 78.63 | 66.67 |
| TraesCS2A01G355000.1 | Wheat | cytosol | 55.56 | 63.11 |
| VIT_04s0008g06800.t01 | Wine grape | plastid | 66.67 | 56.93 |
| Os02t0611450-00 | Rice | extracellular | 28.21 | 55.0 |
| Os04t0499200-01 | Rice | extracellular | 45.3 | 48.18 |
| HORVU2Hr1G086230.3 | Barley | mitochondrion | 55.56 | 39.88 |
| TraesCS2B01G373500.1 | Wheat | plastid | 55.56 | 29.28 |
Protein Annotations
| Gene3D:3.30.2260.10 | MapMan:35.1 | GO:A0A078HNL0 | UniProt:A0A078HNL0 | EnsemblPlants:CDY40120 | ProteinID:CDY40120 |
| ProteinID:CDY40120.1 | InterPro:EHR_sf | InterPro:Enh_rudimentary | GO:GO:0006139 | GO:GO:0006221 | GO:GO:0007049 |
| GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0045747 | EnsemblPlantsGene:GSBRNA2T00069045001 | InterPro:IPR035912 | PFAM:PD008105 | PFAM:PF01133 | PIRSF:PIRSF016393 |
| PANTHER:PTHR12373 | PANTHER:PTHR12373:SF0 | SUPFAM:SSF143875 | UniParc:UPI0004EE88A3 | : | : |
Description
BnaC02g00100DEnhancer of rudimentary homolog [Source:UniProtKB/TrEMBL;Acc:A0A078HNL0]
Coordinates
chrLK032463:-:286651..288152
Molecular Weight (calculated)
13473.0 Da
IEP (calculated)
8.431
GRAVY (calculated)
-0.465
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MVIDFSSYAS NNHNGRHTII LLQNSPSRAT RTFMDYDSIG QAMDGICGLY ERKLKEINPS LRNLSYDIAD LYNFMDGFAD MSALVYEHSM HAYLPYDRQW
101: IKQKAFSHLK RLANGGK
101: IKQKAFSHLK RLANGGK
001: MANHNSSRHT IILLQNSPSR ATRTFMDYDS IGQAMDGICG LYERKLKEIN PSLRNISYDI ADLYNFIDGL ADLSALVYDH SISAYLPYDR QWIKQKAFHH
101: LKRIANGGR
101: LKRIANGGR
Arabidopsis Description
ATEREnhancer of rudimentary homolog [Source:UniProtKB/Swiss-Prot;Acc:Q96319]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.