Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 6
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| mitochondrion:
27297264
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0819700-01 | Rice | mitochondrion | 63.1 | 62.77 |
| EES07768 | Sorghum | mitochondrion | 78.07 | 60.83 |
| TraesCS6B01G435000.1 | Wheat | mitochondrion | 62.57 | 60.62 |
| TraesCS6D01G380400.1 | Wheat | mitochondrion | 61.5 | 57.5 |
| HORVU6Hr1G091500.1 | Barley | mitochondrion | 62.03 | 48.95 |
| TraesCS6A01G395100.1 | Wheat | plastid | 61.5 | 47.72 |
| GSMUA_Achr4P04340_001 | Banana | mitochondrion | 45.45 | 45.21 |
| Bra003197.1-P | Field mustard | mitochondrion | 43.85 | 43.62 |
| VIT_13s0019g04580.t01 | Wine grape | mitochondrion | 44.38 | 43.23 |
| CDY07518 | Canola | mitochondrion | 43.32 | 42.86 |
| CDX67612 | Canola | mitochondrion | 43.32 | 42.86 |
| KRH34848 | Soybean | mitochondrion | 42.78 | 42.55 |
| KRG91929 | Soybean | mitochondrion | 42.25 | 41.8 |
| Bra007101.1-P | Field mustard | mitochondrion | 43.32 | 41.33 |
| PGSC0003DMT400069831 | Potato | mitochondrion | 41.71 | 38.42 |
| Solyc05g053250.2.1 | Tomato | mitochondrion | 41.71 | 38.42 |
| AT3G54826.1 | Thale cress | mitochondrion, plastid | 43.32 | 36.32 |
| CDX73445 | Canola | plastid | 44.38 | 35.93 |
| CDX78266 | Canola | plastid | 43.32 | 35.06 |
Protein Annotations
| EMBL:BT070158 | EnsemblPlants:Zm00001d018501_P001 | EnsemblPlants:Zm00001d018501_T001 | EnsemblPlantsGene:Zm00001d018501 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0008270 | GO:GO:0046872 | InterPro:IPR007853 | InterPro:Mt_import_TIM15 | InterPro:Znf_DNL-typ | PANTHER:PTHR20922 |
| PANTHER:PTHR20922:SF13 | PFAM:PF05180 | PFscan:PS51501 | ProteinID:AQK76278.1 | SEG:seg | UniParc:UPI000195D5BF |
| UniProt:C0PPD9 | MapMan:35.2 | : | : | : | : |
Description
Zim17-type zinc finger protein
Coordinates
chr5:-:221876374..221878395
Molecular Weight (calculated)
19814.5 Da
IEP (calculated)
7.388
GRAVY (calculated)
-0.344
Length
187 amino acids
Sequence
(BLAST)
(BLAST)
001: MATTRLLPLL RRRLAAAIAG SPAPYSLRGP SFPAPAAAGL RSLLKAAGAS DTATEPQDQQ HSETTPPPAS VPTPESGLKV RDTSNLKISP RHDLAMIFTC
101: KVCETRSMKM ASRDSYENGV VVVRCGGCNN LHLMADRLGW FGEPGSIEDF LATQGEEVKK GSTDTISFTL DDLAGSQVSS KGPSEQN
101: KVCETRSMKM ASRDSYENGV VVVRCGGCNN LHLMADRLGW FGEPGSIEDF LATQGEEVKK GSTDTISFTL DDLAGSQVSS KGPSEQN
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
Arabidopsis Description
Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.