Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78266 | Canola | plastid | 96.54 | 96.54 |
| CDX67612 | Canola | mitochondrion | 71.0 | 86.77 |
| CDY07518 | Canola | mitochondrion | 70.56 | 86.24 |
| AT3G54826.1 | Thale cress | mitochondrion, plastid | 50.65 | 52.47 |
| Os02t0819700-01 | Rice | mitochondrion | 38.53 | 47.34 |
| Zm00001d018501_P001 | Maize | mitochondrion | 35.93 | 44.38 |
| TraesCS6B01G435000.1 | Wheat | mitochondrion | 35.93 | 43.01 |
| GSMUA_Achr4P04340_001 | Banana | mitochondrion | 34.2 | 42.02 |
| KRH34848 | Soybean | mitochondrion | 33.77 | 41.49 |
| TraesCS6D01G380400.1 | Wheat | mitochondrion | 35.5 | 41.0 |
| KRG91929 | Soybean | mitochondrion | 32.9 | 40.21 |
| VIT_13s0019g04580.t01 | Wine grape | mitochondrion | 33.33 | 40.1 |
| Solyc05g053250.2.1 | Tomato | mitochondrion | 32.9 | 37.44 |
| PGSC0003DMT400069831 | Potato | mitochondrion | 32.03 | 36.45 |
| EES07768 | Sorghum | mitochondrion | 37.23 | 35.83 |
| HORVU6Hr1G091500.1 | Barley | mitochondrion | 35.5 | 34.6 |
| TraesCS6A01G395100.1 | Wheat | plastid | 35.5 | 34.02 |
Protein Annotations
| EnsemblPlants:CDX73445 | EnsemblPlantsGene:GSBRNA2T00108947001 | GO:A0A078C9F7 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008270 |
| InterPro:IPR007853 | InterPro:Mt_import_TIM15 | InterPro:Znf_DNL-typ | PANTHER:PTHR20922 | PANTHER:PTHR20922:SF13 | PFAM:PF05180 |
| PFscan:PS51501 | ProteinID:CDX73445 | ProteinID:CDX73445.1 | SEG:seg | UniParc:UPI0004EBBD5D | MapMan:35.2 |
Description
BnaC08g25580D
Coordinates
chrLK031799:-:398495..399501
Molecular Weight (calculated)
25659.9 Da
IEP (calculated)
9.664
GRAVY (calculated)
-0.364
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKITPNWGF LTKNKKLEAS FSTCRRRSQP KVSSMAARFL SLRRALSLYL TNQQPRLPLF QAGRLSQSKP LLSRDYAYVG LLQRHLCVSR EASEAAAGTN
101: GCCNSSNSVS ELSKAPFTSP ATTASEDLIV KYKSQLKINP RHDFMMVFTC KVCETRSMKM ASRESYEKGV VVVRCEGCDN LHLIADRLGW FGEPGSVEEL
201: LAARGDEFKK GSMDSLSLTV DDLAGKKISD E
101: GCCNSSNSVS ELSKAPFTSP ATTASEDLIV KYKSQLKINP RHDFMMVFTC KVCETRSMKM ASRESYEKGV VVVRCEGCDN LHLIADRLGW FGEPGSVEEL
201: LAARGDEFKK GSMDSLSLTV DDLAGKKISD E
001: MIKKASFIVL RFQNFTENRS VEFLLSLRLS MAARLLALRR ALSLFSNQQH RFPLSQVSTE QLSLSNSLFS RSHVYGRLFQ RQLSVIREAN EASVTNVCNS
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
101: SNSATESAKV PSPATPSEEM MVKYKSQLKI NPRHDFMMVF TCKVCDTRSM KMASRESYEN GVVVVRCGGC DNLHLIADRR GWFGEPGSVE DFLASQGEEF
201: KKGSMDSLNL TPEDLAGGKI STE
Arabidopsis Description
Zim17-type zinc finger protein [Source:UniProtKB/TrEMBL;Acc:F4JE34]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.