CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77841
CDX92343
CDY09152
CDY26946
CDY30932
CDY59281

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G22630.1	CDX77841	AT3G44720.1	21798944
AT5G22630.1	CDY30932	AT3G44720.1	21798944
AT5G22630.1	CDX92343	AT5G22630.1	21798944
AT5G22630.1	CDY09152	AT5G22630.1	21798944
AT5G22630.1	CDY26946	AT5G22630.1	21798944
AT5G22630.1	CDY59281	AT5G22630.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92343	Canola	plastid	97.88	97.88
Bra002423.1-P	Field mustard	plastid	97.41	95.83
AT5G22630.1	Thale cress	plastid	93.18	93.18
CDY59281	Canola	plastid	93.18	93.18
CDY09152	Canola	plastid	92.47	92.47
CDX88512	Canola	plastid	27.06	91.27
CDY30932	Canola	plastid	73.88	81.35
CDX77841	Canola	plastid	73.65	80.88
GSMUA_Achr8P07590_001	Banana	cytosol	49.65	74.04
KRH26581	Soybean	plastid	72.94	72.94
KRH22725	Soybean	plastid	72.47	72.64
Solyc11g066890.1.1	Tomato	plastid	71.76	71.43
Solyc06g074530.1.1	Tomato	plastid	72.24	70.9
KRH30513	Soybean	plastid	71.06	70.56
PGSC0003DMT400018339	Potato	plastid	71.76	70.44
CDY30526	Canola	plastid	69.18	70.33
KRH25168	Soybean	plastid	70.82	70.33
PGSC0003DMT400068261	Potato	plastid	71.29	69.98
CDY06307	Canola	cytosol	64.24	69.29
CDX77139	Canola	plastid	69.18	69.01
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	57.41	68.93
Os09t0565700-01	Rice	plastid	64.71	68.58
Os09t0566050-00	Rice	plastid	64.47	67.32
TraesCS2D01G290000.1	Wheat	plastid	64.24	65.94
Zm00001d025333_P001	Maize	plastid	64.94	65.87
TraesCS2B01G308500.1	Wheat	plastid	64.0	65.7
TraesCS2A01G292000.1	Wheat	plastid	63.76	65.46
Zm00001d005351_P001	Maize	plastid	64.94	65.4
CDY22691	Canola	cytosol	63.76	64.83
GSMUA_AchrUn_...	Banana	plastid	60.71	64.82
Zm00001d003830_P001	Maize	plastid	64.94	64.79
TraesCS5B01G372500.1	Wheat	plastid	64.0	64.76
TraesCS5D01G379700.1	Wheat	plastid	64.24	64.54
EES10725	Sorghum	plastid	65.41	64.35
TraesCS5A01G370200.1	Wheat	plastid	63.76	64.22
HORVU5Hr1G092190.1	Barley	plastid	64.0	63.85
Os04t0406600-01	Rice	plastid	65.41	63.76
TraesCS2B01G308400.1	Wheat	plastid	62.59	63.48
GSMUA_Achr8P33080_001	Banana	plastid	64.94	63.3
EER96348	Sorghum	plastid	64.94	63.01
TraesCS2D01G289900.2	Wheat	plastid	61.65	62.98
GSMUA_Achr3P22810_001	Banana	plastid	57.41	62.4
CDY72678	Canola	plastid	61.41	62.29
CDY22692	Canola	plastid	61.18	62.05
GSMUA_Achr10P...	Banana	plastid	28.71	58.65
TraesCS2A01G291900.1	Wheat	plastid	62.12	56.77
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	61.41	56.74
CDY28030	Canola	plastid	47.53	53.72
CDY35951	Canola	plastid	47.53	53.3
CDX98196	Canola	extracellular	11.76	53.19
CDX74036	Canola	plastid	47.06	52.77
CDY21012	Canola	mitochondrion	46.82	51.96
CDY31213	Canola	mitochondrion	46.12	51.31
CDY07984	Canola	plastid	45.65	51.19
CDX75178	Canola	cytosol	8.0	49.28
CDY19368	Canola	cytosol	47.53	27.9

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	GO:A0A078GNQ5	UniProt:A0A078GNQ5
InterPro:ACT_dom	EnsemblPlants:CDY26946	ProteinID:CDY26946	ProteinID:CDY26946.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004664	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0008652	GO:GO:0009058	GO:GO:0009073	GO:GO:0009094	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009987	GO:GO:0016829	GO:GO:0047769	EnsemblPlantsGene:GSBRNA2T00036695001
InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00857	ScanProsite:PS00858	PFscan:PS51171
PFscan:PS51671	PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	MetaCyc:PWY-7432	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS
SUPFAM:SSF53850	SUPFAM:SSF55021	UniPathway:UPA00121	UniParc:UPI0004EDE55D	:	:

Description

BnaC09g36370DArogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A078GNQ5]

Coordinates

chrLK032197:+:213523..215057

Molecular Weight (calculated)

45867.2 Da

IEP (calculated)

6.913

GRAVY (calculated)

-0.120

Length

425 amino acids

Sequence
(BLAST)

001: MQTVSPAFSC DLKSLIQTNL TAKSARYCHL NGKRVSVRCS YKSESFSFPN GIGSSRADWQ SSCAILASKV ASAENSSSIT AAVNGHSNGS VNLSLVPSET
101: KNGKPGLVQP LTNTDLSPAP SHGSTLRVAY QGVPGAYSEA AAGKAYPNSE AIPCDQFDVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG
201: EVQIPVHHCL LALPGVRPDC ITRVISHPQA LAQTEGSLNK LTPRAAIEAF HDTAAAAEYI ASNNLHDTAA VASARAAELY GLQILADGIQ DDAGNVTRFL
301: MLARDPIIPR TDRPFKTSIV FAAQEHQGTS VLFKVLSAFA FRNISLTKIE SRPHHNCPLR VVDDGSVGTK KHFEYTFYVD FEASMAEARA QNALAEVQEY
401: TSFLRVLGSY PMDMTPWSTL PSEDA

Best Arabidopsis Sequence Match ( AT5G22630.1 )
(BLAST)

001: MQTISPAFSC DLKSVIQPNL TAKKARYSHV NGKRVSVRCS YRSESFSFPN GVGSSRADWQ SSCAILASKV VSAENSSSVA VVNGHSNGSV DLSLVPSKSQ
101: HNGKPGLIQP LTITDLSPAP SHGSTLRVAY QGVPGAYSEA AAGKAYPNSE AIPCDQFDVA FQAVELWIAD RAVLPVENSL GGSIHRNYDL LLRHRLHIVG
201: EVQIPVHHCL LALPGVRTDC ITRVISHPQA LAQTEGSLNK LTPKAAIEAF HDTAAAAEYI AANNLHDTAA VASARAAELY GLQILADGIQ DDAGNVTRFL
301: MLARDPIIPR TDRPFKTSIV FAAQEHKGTS VLFKVLSAFA FRNISLTKIE SRPHQNCPVR VVGDENVGTS KHFEYTFYVD FEASMAEARA QNALAEVQEY
401: TSFLRVLGSY PMDMTPWSTL PSEDV

Arabidopsis Description

ADT5Arogenate dehydratase [Source:UniProtKB/TrEMBL;Acc:A0A178UL55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.