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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 8
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67612
CDX70737
CDX73445
CDX77841
CDX78266
CDX84994
CDX84995
CDX87453
CDY03849
CDY07518
CDY08765
CDY24397
CDY24398
CDY24399
CDY30932
CDY31621
CDY35849
CDY36104
CDY37838
CDY42101
CDY45614
CDY51132
CDY52535
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G44720.1 CDX70737 AT1G25490.1 21798944
AT3G44720.1 CDX84994 AT1G25490.1 21798944
AT3G44720.1 CDX84995 AT1G25490.1 21798944
AT3G44720.1 CDX87453 AT1G25490.1 21798944
AT3G44720.1 CDY03849 AT1G25490.1 21798944
AT3G44720.1 CDY24397 AT1G25490.1 21798944
AT3G44720.1 CDY24398 AT1G25490.1 21798944
AT3G44720.1 CDY24399 AT1G25490.1 21798944
AT3G44720.1 CDY31621 AT1G25490.1 21798944
AT3G44720.1 CDY35849 AT1G25490.1 21798944
AT3G44720.1 CDY36104 AT1G25490.1 21798944
AT3G44720.1 CDY42101 AT1G25490.1 21798944
AT3G44720.1 CDY51132 AT1G25490.1 21798944
AT3G44720.1 CDY70440 AT1G25490.1 21798944
AT3G44720.1 CDX77841 AT3G44720.1 21798944
AT3G44720.1 CDY30932 AT3G44720.1 21798944
AT3G44720.1 CDX67612 AT3G54826.1 21798944
AT3G44720.1 CDX73445 AT3G54826.1 21798944
AT3G44720.1 CDX78266 AT3G54826.1 21798944
AT3G44720.1 CDY07518 AT3G54826.1 21798944
AT3G44720.1 CDY08765 AT5G65683.1 21798944
AT3G44720.1 CDY37838 AT5G65683.1 21798944
AT3G44720.1 CDY45614 AT5G65683.1 21798944
AT3G44720.1 CDY52535 AT5G65683.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra019468.1-P Field mustard plastid 98.19 98.19
CDX77841 Canola plastid 94.82 94.57
CDX88512 Canola plastid 26.94 82.54
AT3G44720.1 Thale cress plastid 87.05 79.25
CDX92343 Canola plastid 81.61 74.12
CDY26946 Canola plastid 81.35 73.88
CDY09152 Canola plastid 79.53 72.24
CDY59281 Canola plastid 79.27 72.0
GSMUA_Achr8P07590_001 Banana cytosol 48.19 65.26
KRH26581 Soybean plastid 70.21 63.76
KRH22725 Soybean plastid 69.69 63.44
Solyc06g074530.1.1 Tomato plastid 69.69 62.12
PGSC0003DMT400018339 Potato plastid 69.69 62.12
Solyc11g066890.1.1 Tomato plastid 68.65 62.06
CDY06307 Canola cytosol 62.69 61.42
CDY30526 Canola plastid 66.06 61.0
PGSC0003DMT400068261 Potato plastid 68.39 60.97
KRH30513 Soybean plastid 66.58 60.05
CDX77139 Canola plastid 66.06 59.86
KRH25168 Soybean plastid 66.32 59.81
Os09t0565700-01 Rice plastid 61.92 59.6
Os09t0566050-00 Rice plastid 62.44 59.21
HORVU2Hr1G072210.1 Barley cytosol, mitochondrion, plastid 54.15 59.04
Zm00001d025333_P001 Maize plastid 63.99 58.95
Zm00001d003830_P001 Maize plastid 64.25 58.22
TraesCS2D01G290000.1 Wheat plastid 61.92 57.73
TraesCS2B01G308500.1 Wheat plastid 61.66 57.49
CDY22691 Canola cytosol 62.18 57.42
EES10725 Sorghum plastid 64.25 57.41
TraesCS2A01G292000.1 Wheat plastid 61.4 57.25
Zm00001d005351_P001 Maize plastid 62.18 56.87
GSMUA_AchrUn_... Banana plastid 58.55 56.78
TraesCS5B01G372500.1 Wheat plastid 61.66 56.67
Os04t0406600-01 Rice plastid 63.99 56.65
TraesCS5D01G379700.1 Wheat plastid 61.92 56.5
TraesCS5A01G370200.1 Wheat plastid 61.4 56.16
TraesCS2B01G308400.1 Wheat plastid 60.62 55.85
HORVU5Hr1G092190.1 Barley plastid 61.4 55.63
TraesCS2D01G289900.2 Wheat plastid 59.84 55.53
GSMUA_Achr3P22810_001 Banana plastid 55.96 55.24
CDY72678 Canola plastid 59.84 55.13
CDY22692 Canola plastid 59.33 54.65
EER96348 Sorghum plastid 61.92 54.57
CDX98196 Canola extracellular 13.21 54.26
GSMUA_Achr8P33080_001 Banana plastid 60.36 53.44
CDX75178 Canola cytosol 9.07 50.72
HORVU2Hr1G072180.1 Barley cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole 60.1 50.43
TraesCS2A01G291900.1 Wheat plastid 59.84 49.68
GSMUA_Achr10P... Banana plastid 25.65 47.6
CDY28030 Canola plastid 44.56 45.74
CDY35951 Canola plastid 44.3 45.12
CDX74036 Canola plastid 43.78 44.59
CDY07984 Canola plastid 43.26 44.06
CDY21012 Canola mitochondrion 43.01 43.34
CDY31213 Canola mitochondrion 42.23 42.67
CDY19368 Canola cytosol 44.04 23.48
Protein Annotations
KEGG:00400+4.2.1.51Gene3D:3.30.70.260Gene3D:3.40.190.10MapMan:4.1.5.2.4GO:A0A078H0C7UniProt:A0A078H0C7
InterPro:ACT_domEnsemblPlants:CDY30932ProteinID:CDY30932ProteinID:CDY30932.1GO:GO:0003674GO:GO:0003824
GO:GO:0004664GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009094GO:GO:0009987
EnsemblPlantsGene:GSBRNA2T00046483001InterPro:IPR001086InterPro:IPR002912PFAM:PF00800ScanProsite:PS00858PFscan:PS51171
PFscan:PS51671PANTHER:PTHR21022PANTHER:PTHR21022:SF14MetaCyc:PWY-7432InterPro:Preph_deHydtaseInterPro:Preph_deHydtase_CS
SUPFAM:SSF53850SUPFAM:SSF55021UniPathway:UPA00121UniParc:UPI0004EE0537SEG:seg:
Description
BnaA06g19810DBnaA06g19810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0C7]
Coordinates
chrLK032264:+:90226..91500
Molecular Weight (calculated)
41910.6 Da
IEP (calculated)
7.161
GRAVY (calculated)
-0.157
Length
386 amino acids
Sequence
(BLAST)
001: MQAATSCDLK FRSTNLTAST ARPTNGMSKR VNVLCGYRSM PSSFRNGVSV SRADWQSSCA ILSSKVASVE DPGGLADKIA VVNGHKNGSV DLSLVPVETT
101: NGKLSQVQPL TITDLSPAPL HGSNLRVAYQ GVPGAYSEAA AGKAYPNCEA IPCDQFDVAF QAVELWIADR AVLPVENSLG GSIHRNYDLL LRHRLHIVGE
201: VQIPVHHCLL ALPGVRTDCV SRVISHPQAL AQTERSLDNL TPRAAREAFH DTAAAAEYIA ANNLHDTAAT TRETPFKTSI VFAAQEHKGT SVLFKVLSAF
301: AFRNISLTKI ESRPHHNRPL RVVGDGSFGT AKNFEYMFYV DFEASMAETR AQNALSEVQE YTSFLRVLGS YPMDMTPWSM SPTEDA
Best Arabidopsis Sequence Match ( AT3G44720.1 )
(BLAST)
001: MQAATSCDLK FRSTDPTSRN KCFSHAIPKR VAVTCGYRSE SFSFPNGVSV SRSDWQSSCA ILSSKVASVE NTGGLADKIA AVNGHTNGSV NLGLVAVEST
101: NGKLAPAQPL TITDLSPAPL HGSSLRVAYQ GVPGAYSEAA AGKAYPNCDA IPCDQFDVAF QAVELWIADR AVLPVENSLG GSIHRNYDLL LRHRLHIVGE
201: VQIPVHHCLL ALPGVRTDCV SRVISHPQAL AQTEHSLDVL TPHAAREAFH DTAAAAEYIS ANDLHDTAAV ASARAAELYN LQILADGIQD DPGNVTRFLM
301: LAREPIIPRT DRPFKTSIVF AAQEHKGTSV LFKVLSAFAF RDISLTKIES RPHHNRPLRV VGDGSFGTSK NFEYMFYVDF EASMAEPRAQ NALAEVQEYT
401: SFLRVLGSYP MDMTPWSMTS TEEA
Arabidopsis Description
ADT4Arogenate dehydratase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22241]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.