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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • extracellular 3
  • golgi 1
  • plasma membrane 1
  • endoplasmic reticulum 1
  • vacuole 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, secretory
BaCelLo:secretory
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:extracellular
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX75178 Canola cytosol 57.45 78.26
CDX88512 Canola plastid 47.87 35.71
HORVU3Hr1G041870.1 Barley plastid 28.72 19.57
HORVU6Hr1G060430.1 Barley plastid 26.6 18.8
HORVU1Hr1G023740.1 Barley plastid 27.66 17.33
CDY30932 Canola plastid 54.26 13.21
CDY06307 Canola cytosol 55.32 13.2
CDX77841 Canola plastid 54.26 13.18
CDY30526 Canola plastid 57.45 12.92
CDX77139 Canola plastid 57.45 12.68
CDY22691 Canola cytosol 54.26 12.2
CDX92343 Canola plastid 53.19 11.76
CDY09152 Canola plastid 53.19 11.76
CDY26946 Canola plastid 53.19 11.76
CDY59281 Canola plastid 53.19 11.76
CDY72678 Canola plastid 52.13 11.69
CDY22692 Canola plastid 52.13 11.69
CDY28030 Canola plastid 43.62 10.9
CDY35951 Canola plastid 43.62 10.82
CDY07984 Canola plastid 43.62 10.82
CDX74036 Canola plastid 43.62 10.82
CDY21012 Canola mitochondrion 37.23 9.14
CDY31213 Canola mitochondrion 36.17 8.9
CDY19368 Canola cytosol 39.36 5.11
Protein Annotations
KEGG:00400+4.2.1.51Gene3D:3.40.190.10MapMan:4.1.5.2.4GO:A0A078EAJ5EnsemblPlants:CDX98196ProteinID:CDX98196
ProteinID:CDX98196.1GO:GO:0003674GO:GO:0003824GO:GO:0004664GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009094GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00105655001InterPro:IPR001086PFAM:PF00800
PFscan:PS51171PANTHER:PTHR21022PANTHER:PTHR21022:SF14MetaCyc:PWY-7432InterPro:Preph_deHydtaseSUPFAM:SSF53850
UniPathway:UPA00121UniParc:UPI0004EDDD79::::
Description
BnaC07g09020D
Coordinates
chrLK031903:+:639511..640618
Molecular Weight (calculated)
10055.1 Da
IEP (calculated)
5.521
GRAVY (calculated)
0.250
Length
94 amino acids
Sequence
(BLAST)
1: MHRSNPGVAY QGVPKAYSEA AAGKAYPDCQ ATPCDQFEVT FQEVELWIAD RVVLPVEISL IGMFIALRGV VDHQALTPGL HSLAMAAVGI TARS
Best Arabidopsis Sequence Match ( AT2G27820.1 )
(BLAST)
001: MRTLLPSHTP ATVTTAARRR HVIHCAGKRS DSFSINSSSS DWQSSCAILS SKVNSQEQSE SLSSNSNGSS SYHVSAVNGH NNGAGVSDLN LVPFNNNQSI
101: QSKKPLSISD LSPAPMHGSN LRVAYQGVPG AYSEAAAGKA YPNCQAIPCD QFEVAFQAVE LWIADRAVLP VENSLGGSIH RNYDLLLRHR LHIVGEVQLP
201: VHHCLIALPG VRKEFLTRVI SHPQGLAQCE HTLTKLGLNV AREAVDDTAG AAEFIAANNI RDTAAIASAR AAEIYGLEIL EDGIQDDASN VTRFVMLARE
301: PIIPRTDRPF KTSIVFAHEK GTCVLFKVLS AFAFRNISLT KIESRPNHNV PIRLVDEANV GTAKHFEYMF YIDFEASMAE SRAQNALSEV QEFTSFLRVL
401: GSYPMDMTSW SPSSSSSSSS TFSL
Arabidopsis Description
ADT3Arogenate dehydratase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUY3]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.