CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67612
CDX70737
CDX73445
CDX77841
CDX78266
CDX84994
CDX84995
CDX87453
CDY03849
CDY07518
CDY08765
CDY24397
CDY24398
CDY24399
CDY30932
CDY31621
CDY35849
CDY36104
CDY37838
CDY42101
CDY45614
CDY51132
CDY52535
CDY70440

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44720.1	CDX70737	AT1G25490.1	21798944
AT3G44720.1	CDX84994	AT1G25490.1	21798944
AT3G44720.1	CDX84995	AT1G25490.1	21798944
AT3G44720.1	CDX87453	AT1G25490.1	21798944
AT3G44720.1	CDY03849	AT1G25490.1	21798944
AT3G44720.1	CDY24397	AT1G25490.1	21798944
AT3G44720.1	CDY24398	AT1G25490.1	21798944
AT3G44720.1	CDY24399	AT1G25490.1	21798944
AT3G44720.1	CDY31621	AT1G25490.1	21798944
AT3G44720.1	CDY35849	AT1G25490.1	21798944
AT3G44720.1	CDY36104	AT1G25490.1	21798944
AT3G44720.1	CDY42101	AT1G25490.1	21798944
AT3G44720.1	CDY51132	AT1G25490.1	21798944
AT3G44720.1	CDY70440	AT1G25490.1	21798944
AT3G44720.1	CDX77841	AT3G44720.1	21798944
AT3G44720.1	CDY30932	AT3G44720.1	21798944
AT3G44720.1	CDX67612	AT3G54826.1	21798944
AT3G44720.1	CDX73445	AT3G54826.1	21798944
AT3G44720.1	CDX78266	AT3G54826.1	21798944
AT3G44720.1	CDY07518	AT3G54826.1	21798944
AT3G44720.1	CDY08765	AT5G65683.1	21798944
AT3G44720.1	CDY37838	AT5G65683.1	21798944
AT3G44720.1	CDY45614	AT5G65683.1	21798944
AT3G44720.1	CDY52535	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019468.1-P	Field mustard	plastid	95.61	95.85
CDY30932	Canola	plastid	94.57	94.82
CDX88512	Canola	plastid	26.36	80.95
AT3G44720.1	Thale cress	plastid	86.56	79.01
CDX92343	Canola	plastid	81.14	73.88
CDY26946	Canola	plastid	80.88	73.65
CDY09152	Canola	plastid	79.07	72.0
CDY59281	Canola	plastid	78.81	71.76
GSMUA_Achr8P07590_001	Banana	cytosol	48.32	65.61
KRH26581	Soybean	plastid	69.77	63.53
KRH22725	Soybean	plastid	69.25	63.21
Solyc11g066890.1.1	Tomato	plastid	68.48	62.06
CDY06307	Canola	cytosol	63.05	61.93
PGSC0003DMT400018339	Potato	plastid	69.25	61.89
Solyc06g074530.1.1	Tomato	plastid	69.25	61.89
PGSC0003DMT400068261	Potato	plastid	68.22	60.97
CDY30526	Canola	plastid	65.63	60.77
KRH30513	Soybean	plastid	66.41	60.05
KRH25168	Soybean	plastid	66.15	59.81
CDX77139	Canola	plastid	65.63	59.62
Os09t0565700-01	Rice	plastid	61.76	59.6
HORVU2Hr1G072210.1	Barley	cytosol, mitochondrion, plastid	54.01	59.04
Os09t0566050-00	Rice	plastid	62.02	58.97
Zm00001d025333_P001	Maize	plastid	63.05	58.23
CDY22691	Canola	cytosol	62.79	58.13
Zm00001d003830_P001	Maize	plastid	63.05	57.28
TraesCS2D01G290000.1	Wheat	plastid	61.24	57.25
Zm00001d005351_P001	Maize	plastid	62.27	57.11
GSMUA_AchrUn_...	Banana	plastid	58.66	57.04
TraesCS2B01G308500.1	Wheat	plastid	60.98	57.0
TraesCS5B01G372500.1	Wheat	plastid	61.76	56.9
TraesCS2A01G292000.1	Wheat	plastid	60.72	56.76
TraesCS5D01G379700.1	Wheat	plastid	61.76	56.5
EES10725	Sorghum	plastid	63.05	56.48
TraesCS5A01G370200.1	Wheat	plastid	61.24	56.16
TraesCS2B01G308400.1	Wheat	plastid	60.47	55.85
Os04t0406600-01	Rice	plastid	62.79	55.73
HORVU5Hr1G092190.1	Barley	plastid	61.24	55.63
TraesCS2D01G289900.2	Wheat	plastid	59.17	55.05
CDY72678	Canola	plastid	59.43	54.89
EER96348	Sorghum	plastid	62.02	54.79
GSMUA_Achr3P22810_001	Banana	plastid	55.3	54.73
CDY22692	Canola	plastid	59.17	54.65
CDX98196	Canola	extracellular	13.18	54.26
GSMUA_Achr8P33080_001	Banana	plastid	60.21	53.44
CDX75178	Canola	cytosol	9.04	50.72
HORVU2Hr1G072180.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	59.69	50.22
TraesCS2A01G291900.1	Wheat	plastid	59.17	49.25
GSMUA_Achr10P...	Banana	plastid	26.1	48.56
CDY28030	Canola	plastid	44.96	46.28
CDY35951	Canola	plastid	44.7	45.65
CDX74036	Canola	plastid	44.19	45.12
CDY07984	Canola	plastid	43.41	44.33
CDY21012	Canola	mitochondrion	43.41	43.86
CDY31213	Canola	mitochondrion	42.89	43.46
CDY19368	Canola	cytosol	45.22	24.17

Protein Annotations

KEGG:00400+4.2.1.51	Gene3D:3.30.70.260	Gene3D:3.40.190.10	MapMan:4.1.5.2.4	GO:A0A078CKV8	InterPro:ACT_dom
EnsemblPlants:CDX77841	ProteinID:CDX77841	ProteinID:CDX77841.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004664
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009094	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00128952001
InterPro:IPR001086	InterPro:IPR002912	PFAM:PF00800	ScanProsite:PS00858	PFscan:PS51171	PFscan:PS51671
PANTHER:PTHR21022	PANTHER:PTHR21022:SF14	MetaCyc:PWY-7432	InterPro:Preph_deHydtase	InterPro:Preph_deHydtase_CS	SUPFAM:SSF53850
SUPFAM:SSF55021	UniPathway:UPA00121	UniParc:UPI0004EE52F9	SEG:seg	:	:

Description

BnaC03g53780D

Coordinates

chrLK031813:-:451564..452838

Molecular Weight (calculated)

42409.2 Da

IEP (calculated)

7.892

GRAVY (calculated)

-0.157

Length

387 amino acids

Sequence
(BLAST)

001: MQAATSWDLK FRSTNLTAST ARSTNAMSKH VNFLCGYRSK RFSFRNGVSV SRTDWQSSCA ILASKVASVE DPGGLADKIA VVNGHKNSSV DLSLVHVETT
101: NGKLSQVQPL TITDLSPAPL HGSNLRVAYQ GVPGAYSEAA AGKAYPNCEA IPCDQFDVAF QAVELWIADR AVLPVENSLG GSIHRNYDLL LRHRLHIVGE
201: VQIPVHHCLL AFPGVRTDCV SRVISHPQAL AQTERSLDNL TPRAAREAFH DTAAAAEYIA ANNLHDTAAV ASAHRPFKTS IVFAAQEHKG TSVLFKVLSA
301: FAFRNISLTK IESRPHHNRP LRVVRDGSFG TAKNFEYMFY VDFEASMAET RAQNALSEVQ EYTSFLRVLG CYPMDMTPWS MSPTEDA

Best Arabidopsis Sequence Match ( AT3G44720.1 )
(BLAST)

001: MQAATSCDLK FRSTDPTSRN KCFSHAIPKR VAVTCGYRSE SFSFPNGVSV SRSDWQSSCA ILSSKVASVE NTGGLADKIA AVNGHTNGSV NLGLVAVEST
101: NGKLAPAQPL TITDLSPAPL HGSSLRVAYQ GVPGAYSEAA AGKAYPNCDA IPCDQFDVAF QAVELWIADR AVLPVENSLG GSIHRNYDLL LRHRLHIVGE
201: VQIPVHHCLL ALPGVRTDCV SRVISHPQAL AQTEHSLDVL TPHAAREAFH DTAAAAEYIS ANDLHDTAAV ASARAAELYN LQILADGIQD DPGNVTRFLM
301: LAREPIIPRT DRPFKTSIVF AAQEHKGTSV LFKVLSAFAF RDISLTKIES RPHHNRPLRV VGDGSFGTSK NFEYMFYVDF EASMAEPRAQ NALAEVQEYT
401: SFLRVLGSYP MDMTPWSMTS TEEA

Arabidopsis Description

ADT4Arogenate dehydratase 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O22241]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.