CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67755
CDX71939
CDX77604
CDX81260
CDX82059
CDX88606
CDX96484
CDX98311
CDY05010
CDY07232
CDY08848
CDY11886
CDY14061
CDY14513
CDY18693
CDY20694
CDY24202
CDY26279
CDY29914
CDY33389
CDY35525
CDY36582
CDY38263
CDY43361
CDY47745
CDY49624
CDY53978
CDY69127
CDY69709
CDY72296

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25490.1	CDY33389	AT1G15730.1	21798944
AT1G25490.1	CDY36582	AT1G15730.1	21798944
AT1G25490.1	CDX77604	AT1G30260.1	21798944
AT1G25490.1	CDY26279	AT1G30260.1	21798944
AT1G25490.1	CDY49624	AT1G30260.1	21798944
AT1G25490.1	CDY29914	AT1G31870.1	21798944
AT1G25490.1	CDY35525	AT1G31870.1	21798944
AT1G25490.1	CDY69127	AT1G31870.1	21798944
AT1G25490.1	CDX82059	AT1G73590.1	17889649
AT1G25490.1	CDX96484	AT1G73590.1	17889649
AT1G25490.1	CDY47745	AT1G73590.1	17889649
AT1G25490.1	CDY72296	AT1G73590.1	17889649
AT1G25490.1	CDY24202	AT3G13222.1	21798944
AT1G25490.1	CDY43361	AT3G13222.1	21798944
AT1G25490.1	CDX67755	AT3G58630.1	21798944
AT1G25490.1	CDX71939	AT3G58630.1	21798944
AT1G25490.1	CDX98311	AT3G58630.1	21798944
AT1G25490.1	CDY07232	AT4G00231.1	21798944
AT1G25490.1	CDY05010	AT5G06960.1	21798944
AT1G25490.1	CDY14061	AT5G06960.1	21798944
AT1G25490.1	CDX88606	AT5G57090.1	17889649
AT1G25490.1	CDY11886	AT5G57090.1	17889649
AT1G25490.1	CDY20694	AT5G57090.1	17889649
AT1G25490.1	CDY38263	AT5G57090.1	17889649
AT1G25490.1	CDY53978	AT5G57090.1	17889649
AT1G25490.1	CDY69709	AT5G57090.1	17889649
AT1G25490.1	CDX81260	AT5G64813.1	21798944
AT1G25490.1	CDY08848	AT5G64813.1	21798944
AT1G25490.1	CDY14513	AT5G64813.1	21798944
AT1G25490.1	CDY18693	AT5G64813.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24397	Canola	cytosol	76.47	22.03
CDY04181	Canola	endoplasmic reticulum	61.34	21.04
CDY39185	Canola	cytosol	78.99	20.3
CDY69424	Canola	cytosol	80.67	18.08
AT1G25490.1	Thale cress	cytosol	81.51	16.5
CDY36104	Canola	cytosol	80.67	16.33
CDY42101	Canola	cytosol	80.67	16.3
CDY13586	Canola	cytosol	80.67	16.13
CDY51132	Canola	cytosol	78.99	16.04
CDY03849	Canola	cytosol	45.38	10.21
CDY13585	Canola	cytosol, endoplasmic reticulum, golgi	15.13	4.2
CDY35849	Canola	plasma membrane	2.52	2.22
CDY66919	Canola	cytosol	6.72	2.13
CDX87453	Canola	cytosol	2.52	1.95
CDY31621	Canola	endoplasmic reticulum, extracellular	2.52	1.89
CDY49184	Canola	mitochondrion	2.52	1.82
CDY04182	Canola	cytosol	0.84	0.77
CDX84993	Canola	plasma membrane	2.52	0.71
CDX84995	Canola	cytosol	0.84	0.53
CDY70440	Canola	cytosol	0.0	0.0
CDY24398	Canola	extracellular, vacuole	0.0	0.0
CDY24399	Canola	endoplasmic reticulum	0.0	0.0
CDX70737	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX84994	EnsemblPlantsGene:GSBRNA2T00142408001	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20
PFAM:PF13646	PFscan:PS50077	ProteinID:CDX84994	ProteinID:CDX84994.1	SUPFAM:SSF48371	UniParc:UPI0004EE5D0A
MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:	:	:

Description

BnaC05g20610D

Coordinates

chrLK031839:+:1262266..1263101

Molecular Weight (calculated)

13334.4 Da

IEP (calculated)

6.248

GRAVY (calculated)

0.200

Length

119 amino acids

Sequence
(BLAST)

001: MSLWLDRSGM CVTATSRRRS GEVALELSTD SSQHVRSALA SVIMRMSPIL GKDSTIEHLL PIFLSLVKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
101: AIVELAEDRH WRVRLAIIE

Best Arabidopsis Sequence Match ( AT1G13320.1 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRVPNI KFNVAKMMQS LIPIVDQAVV ENMIRPCLVE LSEDPDVDVR YFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.