CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24398	Canola	extracellular, vacuole	16.82	87.65
CDY04182	Canola	cytosol	20.38	66.15
VIT_00s0131g00270.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	11.85	64.94
VIT_19s0027g00070.t01	Wine grape	cytosol	11.61	63.64
VIT_00s0131g00290.t01	Wine grape	cytosol	11.61	63.64
VIT_04s0043g00200.t01	Wine grape	mitochondrion	10.9	59.74
GSMUA_AchrUn_...	Banana	cytosol	34.6	55.94
VIT_03s0038g00200.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	17.77	52.45
VIT_15s0045g00050.t01	Wine grape	cytosol	22.04	51.67
CDY42101	Canola	cytosol	61.61	44.14
CDY51132	Canola	cytosol	59.72	43.0
CDY36104	Canola	cytosol	59.48	42.69
CDY03849	Canola	cytosol	53.08	42.34
CDY69424	Canola	cytosol	53.08	42.18
VIT_04s0008g07090.t01	Wine grape	cytosol	8.53	40.0
Zm00001d045482_P001	Maize	cytosol	54.27	39.01
HORVU5Hr1G051850.3	Barley	cytosol	54.27	39.01
TraesCS5B01G165200.3	Wheat	cytosol, golgi	54.03	38.84
TraesCS5D01G172700.4	Wheat	cytosol	54.03	38.84
TraesCS5A01G168400.5	Wheat	cytosol	54.03	38.84
KXG19189	Sorghum	cytosol	54.03	38.84
Zm00001d036031_P001	Maize	cytosol	53.79	38.67
CDY13586	Canola	cytosol	53.55	37.98
KXG20320	Sorghum	cytosol	51.9	37.31
Zm00001d046506_P002	Maize	cytosol	51.9	36.81
CDY39185	Canola	cytosol	35.07	31.97
CDY24397	Canola	cytosol	25.12	25.67
CDY04181	Canola	endoplasmic reticulum	16.59	20.17
CDY66919	Canola	cytosol	9.24	10.4
CDY13585	Canola	cytosol, endoplasmic reticulum, golgi	7.35	7.23
CDY31621	Canola	endoplasmic reticulum, extracellular	2.61	6.92
CDY49184	Canola	mitochondrion	2.37	6.06
CDY24399	Canola	endoplasmic reticulum	0.24	5.56
CDX87453	Canola	cytosol	1.66	4.55
PGSC0003DMT400044033	Potato	mitochondrion	0.71	4.17
CDY70440	Canola	cytosol	1.42	3.87
CDY35849	Canola	plasma membrane	1.18	3.7
CDX70737	Canola	cytosol	0.95	3.36
CDX84995	Canola	cytosol	1.42	3.19
CDX84994	Canola	mitochondrion	0.71	2.52

Protein Annotations

EnsemblPlants:CDX84993	EnsemblPlantsGene:GSBRNA2T00142404001	Gene3D:1.25.10.10	GO:A0A078DCG2	GO:GO:0003674	GO:GO:0005488
InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	PFscan:PS50077	ProteinID:CDX84993	ProteinID:CDX84993.1	SUPFAM:SSF48371	TMHMM:TMhelix
UniParc:UPI0004EE3F97	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:	:	:

Description

BnaC05g20620D

Coordinates

chrLK031839:+:1254032..1257288

Molecular Weight (calculated)

47326.8 Da

IEP (calculated)

6.188

GRAVY (calculated)

0.090

Length

422 amino acids

Sequence
(BLAST)

001: MKQRRERNHN FIEVENEITY GELIVNKSRV ENLIPFRHYT IDVVYLVLVI CAGDVLSLLS LDTPGSLRLN SIHRLSTISR ALGEERTRKE LIPFLSENSG
101: DNDEVLLAMA EELGVFIPYV GGVEHAHVLL PPLESLCTVE ETSVREKAVD SLCKIGFQMR ESDLVDSFVP LVKRLAVGEW FAARVSACGL FHVLYQGCTD
201: VLKTELRSSY SQLFKDDMPM VQRAAASNLG KFASTVESSY LVAEIMTMFD DLTKDEQDSV RLLAVEGCTA LGKFLEPQEC VARILPVIVK FFLTINLGGC
301: GTWLPISYMN FVRKWVLIPL GMTDLVPAYV RLLRDNEAEV RIAAAGKVTK FCQLLNPDLV IQHILRCVKY SDCRTSSEGY QNNENAIVLQ KKDCFSLVAP
401: QVLNLGLGNL KTINQMTKRP LK

Best Arabidopsis Sequence Match ( AT1G13320.2 )
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQRRLNSI KRLSIIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGGFILYVGG VEYAYVLLPP LETLSTVEET
101: CVREKAVDSL CRIGAQMRES DLVEHFTPLA KRLSAGEWFT ARVSACGIFH IAYPSAPDVL KTELRSIYGQ LCQDDMPMVR RAAATNLGKF AATIESAHLK
201: TDIMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTD LVPAYARLLC DNEAEVRIAA
301: AGKVTKFCRI LNPELAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDEKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIVPQV LEMINNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPAVI TASKDRQFQT SNLTWPK

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.