CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87680
EES03643
EES07862
KXG22792

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	EES03643	AT1G29195.1	21798944
AT1G13320.1	EES07862	AT3G08780.1	21798944
AT1G13320.1	KXG22792	AT3G08780.1	21798944
AT1G13320.1	EER87680	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046506_P002	Maize	cytosol	97.61	96.3
KXG19189	Sorghum	cytosol	95.23	95.23
HORVU5Hr1G051850.3	Barley	cytosol	94.21	94.21
TraesCS5D01G172700.4	Wheat	cytosol	94.04	94.04
TraesCS5B01G165200.3	Wheat	cytosol, golgi	94.04	94.04
TraesCS5A01G168400.5	Wheat	cytosol	94.04	94.04
Solyc05g009600.2.1	Tomato	plastid	87.39	87.39
KRG90789	Soybean	endoplasmic reticulum, nucleus	86.71	87.01
AT3G25800.3	Thale cress	cytosol	86.71	86.71
KRH35974	Soybean	endoplasmic reticulum, nucleus	86.37	86.67
KRH70562	Soybean	endoplasmic reticulum	85.01	85.01
AT1G13320.1	Thale cress	cytosol	84.67	84.67
KRH32720	Soybean	cytosol	14.99	82.24
Bra017348.1-P	Field mustard	cytosol	35.78	81.08
Solyc04g007100.2.1	Tomato	cytosol	71.04	79.43
GSMUA_Achr10P...	Banana	cytosol, endoplasmic reticulum	29.47	77.93
VIT_15s0045g00050.t01	Wine grape	cytosol	23.68	77.22
VIT_03s0038g00200.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.74	76.92
VIT_00s0131g00290.t01	Wine grape	cytosol	9.88	75.32
VIT_19s0027g00070.t01	Wine grape	cytosol	9.88	75.32
GSMUA_AchrUn_...	Banana	cytosol	33.05	74.33
VIT_00s0131g00270.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	9.71	74.03
VIT_04s0043g00200.t01	Wine grape	mitochondrion	9.37	71.43
Solyc05g045950.1.1	Tomato	cytosol	17.38	57.3
VIT_04s0008g07090.t01	Wine grape	cytosol	8.69	56.67
CDX84993	Canola	plasma membrane	37.31	51.9
PGSC0003DMT400044033	Potato	mitochondrion	6.13	50.0
Bra025162.1-P	Field mustard	cytosol	56.56	43.12

Protein Annotations

EnsemblPlants:KXG20320	EnsemblPlantsGene:SORBI_3010G185400	Gene3D:1.25.10.10	GO:GO:0003674	GO:GO:0005488	InterPro:ARM-like
InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	InterPro:Vac14_Fab1-bd	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	PFAM:PF12755	PFAM:PF13646	PFscan:PS50077	ProteinID:KXG20320	ProteinID:KXG20320.1
SUPFAM:SSF48371	UniParc:UPI0002207311	UniProt:A0A194YK10	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	:

Description

hypothetical protein

Coordinates

chr10:+:52549345..52558020

Molecular Weight (calculated)

65390.7 Da

IEP (calculated)

4.662

GRAVY (calculated)

0.118

Length

587 amino acids

Sequence
(BLAST)

001: MAMIDEPLYP IAVLIDELKN EDIQLRLNSI RKLSTIARAL GEERTRKELI PFLSENNDDE DEVLLAMAEE LGVFIPYVGG VEHAHVLLPP LETLCTVEET
101: CVRDKAVESL CRIGAQMKEN DIVDWFAPVV KRLAAGEWFT ARVSSCGLFH IAYPSASEQL KAELRTIYGQ LCQDDMPMVR RAAASNLGKF AATVEQSHLK
201: TEIMSIFDDL TQDDQDSVRL LAVEGCAALG KLLEPQDCAA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGTEPTRGD LVSAYVRLLC DNEAEVRIAA
301: AGKVTKFCKI LNPQIAIEHI LPCVKELSTD SSQHVRSALA SVIMGMAPVL GKDATIEQLL PIFLALLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLEDKVF SIRDAAANNL KRLAEEFGPE WAMQHIIPQV LEKINNPHYL YRMTTLQAIS
501: LLAPVMGPDI TCQQLLPVVI ASSKDRVPNM KFNVAKVLQS LVPILDQSVV EKAVKPCLVE LSEDPDVDVR YYAHQALRAC DQMVISS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.