CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90789	Soybean	endoplasmic reticulum, nucleus	92.84	93.16
KRH35974	Soybean	endoplasmic reticulum, nucleus	92.84	93.16
Solyc05g009600.2.1	Tomato	plastid	88.93	88.93
KRH32720	Soybean	cytosol	16.18	88.78
PGSC0003DMT400033762	Potato	cytosol	88.76	88.76
KRH48464	Soybean	endoplasmic reticulum	88.08	88.08
KRH39213	Soybean	cytosol, endoplasmic reticulum	87.56	87.56
KXG19189	Sorghum	cytosol	87.05	87.05
HORVU5Hr1G051850.3	Barley	cytosol	87.05	87.05
TraesCS5D01G172700.4	Wheat	cytosol	86.88	86.88
TraesCS5A01G168400.5	Wheat	cytosol	86.88	86.88
TraesCS5B01G165200.3	Wheat	cytosol, golgi	86.88	86.88
Zm00001d036031_P001	Maize	cytosol	86.71	86.71
Zm00001d045482_P001	Maize	cytosol	86.54	86.54
KXG20320	Sorghum	cytosol	85.01	85.01
Zm00001d046506_P002	Maize	cytosol	83.82	82.69
PGSC0003DMT400041039	Potato	cytosol	44.29	81.76
Solyc04g007100.2.1	Tomato	cytosol	72.74	81.33
PGSC0003DMT400041034	Potato	cytosol	34.24	75.56
Solyc05g045950.1.1	Tomato	cytosol	18.23	60.11

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100796862	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	EMBL:ACUP02000782	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_02G097600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HEAT
InterPro:HEAT_type_2	UniProt:I1JDU7	InterPro:IPR011989	InterPro:IPR021133	EnsemblPlants:KRH70562	ProteinID:KRH70562
ProteinID:KRH70562.1	PFAM:PF02985	PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20
SUPFAM:SSF48371	UniParc:UPI0002337547	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:8768250..8776075

Molecular Weight (calculated)

65963.7 Da

IEP (calculated)

4.860

GRAVY (calculated)

0.125

Length

587 amino acids

Sequence
(BLAST)

001: MSMVDEPLYP IAVLIDELKN DDIQLRLNSI RKLSTIARAL GEERTRRELI PFLGENNDDD DEVLLAMAEE LGVFIPFVGG VEHAHVLLPP LEMLCTVEET
101: CVRDKAVESL CRIGLQMRES DLVEYFIPLV KRLASGEWFT ARVSSCGLFH IAYPSAPEMS KIELRSMYSL LCQDDMPMVR RSAASNLGKY AATVEYAHLK
201: ADTMSIFEDL TKDDQDSVRL LAVEGCAALG KLLEPQDCIT HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPDLSIQHI LPCVKELSTD SLQHVRSALA SVIMGMAPVL GKDATIEQLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG INLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFYDKLGAL CMQWLQDKVH SIREAAANNL KRLAEEFGPE WAMQHIIPQV LEMISNPHYL YRMTILHAIS
501: LLAPVMGSEI TRSELLPIVI TASKDRVPNI KFNVAKVLES IFPIVDQSVV EKTIRPSLVE LSEDPDVDVR FFSNQALHAM DHVMMSS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.