CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48464	Soybean	endoplasmic reticulum	98.3	98.3
KRH32720	Soybean	cytosol	17.04	93.46
KRG90789	Soybean	endoplasmic reticulum, nucleus	89.1	89.4
KRH35974	Soybean	endoplasmic reticulum, nucleus	88.76	89.06
PGSC0003DMT400010375	Potato	cytosol	87.56	88.47
Solyc06g069180.2.1	Tomato	cytosol	87.56	88.47
KRH70562	Soybean	endoplasmic reticulum	87.56	87.56
VIT_17s0000g03870.t01	Wine grape	cytosol	92.84	84.89

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100781098	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	EMBL:ACUP02005925	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_09G185700	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:HEAT
InterPro:HEAT_type_2	UniProt:I1L4D3	InterPro:IPR011989	InterPro:IPR021133	EnsemblPlants:KRH39213	ProteinID:KRH39213
ProteinID:KRH39213.1	ProteinID:KRH39214.1	PFAM:PF02985	PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	SUPFAM:SSF48371	UniParc:UPI0002338E86	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:41075221..41083925

Molecular Weight (calculated)

65353.5 Da

IEP (calculated)

4.681

GRAVY (calculated)

0.112

Length

587 amino acids

Sequence
(BLAST)

001: MAMVDQPLYP IAVLIDELKN EDIQLRLNSI RRLSTIARAL GEDRTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEHANVLLPP LETLCTVEET
101: SVRDKSVESL CRIGAQMREQ DLVEYLIPLV KRLAAGEWFT ARVSSCGLFH IAYPSAPEAV KTELRAIYGQ LCQDDMPMVR RSAATNLGKF AATVEAPHLK
201: SDIMSVFEDL THDDQDSVRL LAVEGCAALG KLLEPQDCVA HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPDPTRSE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFSRI LNPDLAIQHI LPCVKELSTD SSQHVRSALA SVIMGMAPVL GKDATIEQLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV SFFDDKLGAL CMQWLKDKVY SIRDAAANNI KRLAEEFGPD WAMQHIIPQV LDMVTDPHYL YRMTILQSIS
501: LLAPVLGSEI SSSKLLPLVI NASKDRVPNI KFNVAKVLQS LIPIVDQSVV ESTIRPCLVE LSEDPDVDVR FFASQALQSC DQVKMSS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.