Factsheet for VIT_17s0000g03870.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48464	Soybean	endoplasmic reticulum	85.83	93.87
KRH39213	Soybean	cytosol, endoplasmic reticulum	84.89	92.84
PGSC0003DMT400010375	Potato	cytosol	82.71	91.39
Solyc06g069180.2.1	Tomato	cytosol	82.24	90.88
VIT_01s0011g03280.t01	Wine grape	cytosol	80.06	87.56
VIT_15s0045g00050.t01	Wine grape	cytosol	23.83	85.0
VIT_03s0038g00200.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	18.85	84.62
VIT_00s0131g00290.t01	Wine grape	cytosol	10.12	84.42
VIT_19s0027g00070.t01	Wine grape	cytosol	10.12	84.42
VIT_00s0131g00270.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	9.81	81.82
VIT_04s0043g00200.t01	Wine grape	mitochondrion	9.66	80.52
VIT_00s2436g00010.t01	Wine grape	cytosol	9.97	80.0
VIT_00s2496g00010.t01	Wine grape	cytosol	10.59	80.0
VIT_01s0011g00330.t01	Wine grape	cytosol	10.44	78.82
VIT_04s0008g07090.t01	Wine grape	cytosol	8.41	60.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100266203	wikigene:100266203	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CBI15438	ProteinID:CBI15438.3	UniProt:D7SIX7	EMBL:FN594950	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:HEAT	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
EntrezGene:LOC100266203	wikigene:LOC100266203	PFAM:PF02985	PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648
PANTHER:PTHR10648:SF20	SUPFAM:SSF48371	TIGR:TC54983	TIGR:TC59926	TIGR:TC65840	TIGR:TC69660
UniParc:UPI0001BE0C5D	ArrayExpress:VIT_17s0000g03870	EnsemblPlantsGene:VIT_17s0000g03870	EnsemblPlants:VIT_17s0000g03870.t01	unigene:Vvi.6713	RefSeq:XP_002276180
RefSeq:XP_002276180.1	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:3777808..3798268

Molecular Weight (calculated)

71650.4 Da

IEP (calculated)

4.830

GRAVY (calculated)

0.133

Length

642 amino acids

Sequence
(BLAST)

001: MKDTDFFFSA LLKLVEGSSL SSPKFQDGLR LPHLRSQILL FPNCPFLFSH FHCSEMAMID EPLYPIAVLI DELKNEDIQL RLNSIRRLST IARALGEERT
101: RKELIPFLSE NNDDDDEVLL AMAEELGVFI PYVGGVEHAN VLLPPLETLC TVEETCVRDK AVESLCRIGA QMREPDLVES FIPLVKRLAA GEWFTARVSS
201: CGLFHIAYPS APETLKTELR AIYSQLCQDD MPMVRRSAAS NLGKFAATVE AAHLKADIMS IFEDLTQDDQ DSVRLLAVEG CAALGKLLEP QDCVAHILPV
301: IVNFSQDKSW RVRYMVANQL YELCEAVGPE PTRSDLVPAY VRLLRDNEAE VRIAAAGKVT KFCRILNPEL AIQHILPCVK ELSSDSSQHV RSALASVIMG
401: MAPVLGKDAT IDQLLPIFLS LLKDEFPDVR LNIISKLDQV NQVIGIDLLS QSLLPAIVEL AEDRHWRVRL AIIEYIPLLA SQLGVGFFDD KLGALCMQWL
501: KDKVYSIRDA AANNVKRLAE EFGPDWAMQH IIPQVLDMIN NPHYLYRMTI LHAISLLAPV MGPEITCSKL LPVVINAAKD RVPNIKFNVA KVLQSLTPIV
601: DQSVVDKTIR PCLVELSEDP DVDVRFFASQ ALQASDQIMM SS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.