Factsheet for VIT_01s0011g03280.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
golgi 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0000g03870.t01	Wine grape	cytosol	87.56	80.06
VIT_03s0038g00200.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	17.89	73.43
VIT_00s2436g00010.t01	Wine grape	cytosol	9.88	72.5
VIT_15s0045g00050.t01	Wine grape	cytosol	22.15	72.22
VIT_00s2496g00010.t01	Wine grape	cytosol	10.39	71.76
VIT_01s0011g00330.t01	Wine grape	cytosol	10.22	70.59
VIT_00s0131g00290.t01	Wine grape	cytosol	8.86	67.53
VIT_19s0027g00070.t01	Wine grape	cytosol	8.86	67.53
VIT_00s0131g00270.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	8.69	66.23
VIT_04s0043g00200.t01	Wine grape	mitochondrion	8.35	63.64
VIT_04s0008g07090.t01	Wine grape	cytosol	7.67	50.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100244069	wikigene:100244069	MapMan:13.4.1.2.4	MapMan:18.4.24.1.2.1	EMBL:AM482812
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CAN68660	ProteinID:CAN68660.1	ProteinID:CCB50930	ProteinID:CCB50930.1
UniProt:F6HFP5	EMBL:FN595752	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005886	GO:GO:0006464	GO:GO:0006810
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009723
GO:GO:0009789	GO:GO:0009926	GO:GO:0009987	GO:GO:0010119	GO:GO:0016020	GO:GO:0019538
GO:GO:0030312	GO:GO:0035304	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133	EntrezGene:LOC100244069
wikigene:LOC100244069	PFAM:PF13646	PFscan:PS50077	PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	SUPFAM:SSF48371
TIGR:TC63399	UniParc:UPI00015C7D51	ArrayExpress:VIT_01s0011g03280	EnsemblPlantsGene:VIT_01s0011g03280	EnsemblPlants:VIT_01s0011g03280.t01	unigene:Vvi.2606
RefSeq:XP_002282096	RefSeq:XP_002282096.2	RefSeq:XP_010647838.1	:	:	:

Description

No Description!

Coordinates

chr1:-:2967860..2979364

Molecular Weight (calculated)

66009.7 Da

IEP (calculated)

4.838

GRAVY (calculated)

0.138

Length

587 amino acids

Sequence
(BLAST)

001: MAMVDEPLYP IAVLIDELKN ADIQLRLNSI RRLSTIARAL GEERTRNELI PFLSENNDDD DEVLLAMTEE LGVFIPYVGG LEHACVLLPP LETLCTVEET
101: RVRDKAVESL CRIGSQMKEN DLINWFIPLV KRLASGEWFT ARVSACGLFH IAYPSAPEML KMELRAIYSQ LCQDDMPMVR RSAASSLWKF SATVEPVHLK
201: NDIMTIFENL TQDDQDSVRL LVVEGCATLG KLLEPQECIA RILPVIISFS QDRSWRVRYM VADQLYELCH AVGPEATRTD LVPAYMRLLR DNEAEVRIAA
301: AGKVTKFCQI LNPELAIHHI LPCVKELSLD SSQHVRSALA SVLMGMAPVL GKDATIDQLL PIFLSLLKDD FPDVRLNIIS KLDQINQVIG TDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGI KFFDDELGAL CMQWLQDKVY SIRDAAANNL KRLAEEFGPD WAMQHLIPQV LEMINNSHYL YRMTVLRAIS
501: LLAPAMGAEI TYSKLLPVVI SASNDRVPNV KFNVAKVLQS LIPIVDHSVV EKTIRPCLVE LSEDPDVDVR FSANQAIHVI DHVMMSS

Best Arabidopsis Sequence Match ( AT3G25800.3 )
(BLAST)

001: MSMIDEPLYP IAVLIDELKN DDIQLRLNSI RRLSTIARAL GEERTRKELI PFLSENNDDD DEVLLAMAEE LGVFIPYVGG VEYAHVLLPP LETLSTVEET
101: CVREKAVESL CRVGSQMRES DLVDHFISLV KRLAAGEWFT ARVSACGVFH IAYPSAPDML KTELRSLYTQ LCQDDMPMVR RAAATNLGKF AATVESAHLK
201: TDVMSMFEDL TQDDQDSVRL LAVEGCAALG KLLEPQDCVQ HILPVIVNFS QDKSWRVRYM VANQLYELCE AVGPEPTRTE LVPAYVRLLR DNEAEVRIAA
301: AGKVTKFCRI LNPEIAIQHI LPCVKELSSD SSQHVRSALA SVIMGMAPVL GKDATIEHLL PIFLSLLKDE FPDVRLNIIS KLDQVNQVIG IDLLSQSLLP
401: AIVELAEDRH WRVRLAIIEY IPLLASQLGV GFFDDKLGAL CMQWLQDKVH SIRDAAANNL KRLAEEFGPE WAMQHIVPQV LEMVNNPHYL YRMTILRAVS
501: LLAPVMGSEI TCSKLLPVVM TASKDRVPNI KFNVAKVLQS LIPIVDQSVV EKTIRPGLVE LSEDPDVDVR FFANQALQSI DNVMMSS

Arabidopsis Description

PP2AA2Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38950]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.