Factsheet for VIT_00s2436g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0058g00530.t01
VIT_10s0003g01310.t01
VIT_13s0019g04710.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13320.1	VIT_10s0003g01310.t01	AT1G29195.1	21798944
AT1G13320.1	VIT_08s0058g00530.t01	AT3G08780.1	21798944
AT1G13320.1	VIT_13s0019g04710.t01	AT3G54850.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s2496g00010.t01	Wine grape	cytosol	100.0	94.12
VIT_01s0011g00330.t01	Wine grape	cytosol	98.75	92.94
KRH32720	Soybean	cytosol	72.5	54.21
VIT_03s0038g00200.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	93.75	52.45
VIT_15s0045g00050.t01	Wine grape	cytosol	77.5	34.44
GSMUA_AchrUn_...	Banana	cytosol	75.0	24.79
PGSC0003DMT400041039	Potato	cytosol	61.25	15.41
CDY39185	Canola	cytosol	77.5	13.39
CDY04181	Canola	endoplasmic reticulum	55.0	12.68
CDY69424	Canola	cytosol	77.5	11.68
AT1G13320.1	Thale cress	cytosol	77.5	10.56
PGSC0003DMT400033762	Potato	cytosol	77.5	10.56
Solyc05g009600.2.1	Tomato	plastid	77.5	10.56
Solyc04g007100.2.1	Tomato	cytosol	68.75	10.48
CDY13586	Canola	cytosol	77.5	10.42
AT3G25800.3	Thale cress	cytosol	76.25	10.39
VIT_17s0000g03870.t01	Wine grape	cytosol	80.0	9.97
VIT_01s0011g03280.t01	Wine grape	cytosol	72.5	9.88
Bra025162.1-P	Field mustard	cytosol	76.25	7.92
CDY49184	Canola	mitochondrion	5.0	2.42
Solyc05g045950.1.1	Tomato	cytosol	2.5	1.12
PGSC0003DMT400041034	Potato	cytosol	2.5	0.75
VIT_00s0131g00270.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	0.0	0.0
VIT_00s0131g00290.t01	Wine grape	cytosol	0.0	0.0
CDY04182	Canola	cytosol	0.0	0.0
VIT_04s0008g07090.t01	Wine grape	cytosol	0.0	0.0
VIT_04s0043g00200.t01	Wine grape	mitochondrion	0.0	0.0
VIT_19s0027g00070.t01	Wine grape	cytosol	0.0	0.0

Protein Annotations

ArrayExpress:VIT_00s2436g00010	EMBL:FN595633	EnsemblPlants:VIT_00s2436g00010.t01	EnsemblPlantsGene:VIT_00s2436g00010	Gene3D:1.25.10.10	GO:GO:0003674
GO:GO:0005488	InterPro:ARM-like	InterPro:ARM-type_fold	InterPro:HEAT_type_2	InterPro:IPR011989	InterPro:IPR021133
PANTHER:PTHR10648	PANTHER:PTHR10648:SF20	PFscan:PS50077	ProteinID:CCB50221	ProteinID:CCB50221.1	SUPFAM:SSF48371
UniParc:UPI0002107F14	UniProt:F6HDC6	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrUn:-:41996828..41997255

Molecular Weight (calculated)

9204.2 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.131

Length

80 amino acids

Sequence
(BLAST)

1: DKSWRVRYMV ANQLYELCEV VGPEPTRSDL VPAYVRLLHD NEAEVRITAA GKVTKFCWIL NPKLAIPPYP SHVSSIFQKF

Best Arabidopsis Sequence Match ( AT1G13320.4 )
(BLAST)

001: MPMVRRAAAT NLGKFAATIE SAHLKTDIMS MFEDLTQDDQ DSVRLLAVEG CAALGKLLEP QDCVAHILPV IVNFSQDKSW RVRYMVANQL YELCEAVGPE
101: PTRTDLVPAY ARLLCDNEAE VRIAAAGKVT KFCRILNPEL AIQHILPCVK ELSSDSSQHV RSALASVIMG MAPVLGKDAT IEHLLPIFLS LLKDEFPDVR
201: LNIISKLDQV NQVIGIDLLS QSLLPAIVEL AEDRHWRVRL AIIEYIPLLA SQLGVGFFDE KLGALCMQWL QDKVHSIREA AANNLKRLAE EFGPEWAMQH
301: IVPQVLEMIN NPHYLYRMTI LRAVSLLAPV MGSEITCSKL LPAVITASKD RVPNIKFNVA KMMQSLIPIV DQAVVENMIR PCLVELSEDP DVDVRYFANQ
401: ALQSIDNVMM SS

Arabidopsis Description

PP2AA3Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform [Source:UniProtKB/Swiss-Prot;Acc:Q38951]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.