Skip to main content
crop-pal logo
Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • nucleus 2
  • extracellular 5
  • endoplasmic reticulum 3
  • vacuole 3
  • plasma membrane 3
  • golgi 3
  • cytosol 1
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_17s0000g06020.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G29195.1 VIT_17s0000g06020.t01 AT3G47620.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH58967 Soybean cytosol, golgi 61.75 64.57
KRH11017 Soybean extracellular 60.11 62.5
KRH42866 Soybean extracellular, plasma membrane 59.56 62.29
CDX90174 Canola cytosol, endoplasmic reticulum 56.83 60.82
CDY43324 Canola cytosol, endoplasmic reticulum 57.38 60.69
Bra010845.1-P Field mustard cytosol, endoplasmic reticulum 57.92 60.23
Bra030125.1-P Field mustard cytosol, extracellular 57.92 59.89
Solyc02g076800.1.1 Tomato extracellular 62.3 59.69
CDY15646 Canola cytosol, extracellular 57.38 59.32
CDX94651 Canola cytosol, extracellular 57.38 59.32
GSMUA_Achr4P08040_001 Banana extracellular 53.55 57.99
KRH21271 Soybean cytosol, nucleus, plastid 61.75 57.95
Solyc03g006160.1.1 Tomato cytosol, extracellular, nucleus 56.83 57.46
GSMUA_Achr6P26830_001 Banana cytosol, endoplasmic reticulum, plastid 50.27 55.76
PGSC0003DMT400011206 Potato extracellular 57.92 55.5
AT1G29195.1 Thale cress cytosol, endoplasmic reticulum 57.92 54.92
GSMUA_Achr6P22730_001 Banana cytosol 48.63 53.94
VIT_06s0004g07460.t01 Wine grape extracellular, golgi 43.17 53.38
TraesCS3B01G330000.1 Wheat cytosol, extracellular 53.01 51.05
TraesCS3A01G306500.1 Wheat cytosol, extracellular 53.01 50.0
TraesCS3D01G295400.1 Wheat extracellular 51.91 50.0
Os01t0758500-01 Rice cytosol 52.46 49.23
GSMUA_Achr7P25280_001 Banana extracellular 46.45 48.85
Zm00001d043399_P001 Maize extracellular 52.46 48.48
HORVU3Hr1G073050.1 Barley cytosol, endoplasmic reticulum 50.82 47.69
EES03643 Sorghum endoplasmic reticulum, extracellular 50.27 44.23
Zm00001d012700_P001 Maize extracellular 49.18 41.86
Protein Annotations
EntrezGene:100265230wikigene:100265230MapMan:35.2ProteinID:CCB55687ProteinID:CCB55687.1InterPro:DUF4228_plant
UniProt:F6HM99EMBL:FN595992GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0009507GO:GO:0009536EntrezGene:LOC100265230wikigene:LOC100265230PFAM:PF14009PANTHER:PTHR33052
PANTHER:PTHR33052:SF3UniParc:UPI0002107FBAArrayExpress:VIT_10s0003g01310EnsemblPlantsGene:VIT_10s0003g01310EnsemblPlants:VIT_10s0003g01310.t01RefSeq:XP_002272922
RefSeq:XP_002272922.1SEG:seg::::
Description
No Description!
Coordinates
chr10:-:2640521..2646911
Molecular Weight (calculated)
20530.5 Da
IEP (calculated)
10.317
GRAVY (calculated)
-0.723
Length
183 amino acids
Sequence
(BLAST)
001: MKNTIRCCIS CILPCGALDV VRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSSSEE GVVPKIVVVP PDAELQRGKI YFLMPIPPPP EKTRSRSSTR
101: KKRRDSESNN TNTHHHHSNT ANNTISMTNL LISDRYLSEI LSEKISTQRD RRRGRVGVWR PHLESISETP SGGQGRDPRE TWN
Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.