Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
VIT_17s0000g06020.t01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G29195.1 | VIT_17s0000g06020.t01 | AT3G47620.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH58967 | Soybean | cytosol, golgi | 61.75 | 64.57 |
KRH11017 | Soybean | extracellular | 60.11 | 62.5 |
KRH42866 | Soybean | extracellular, plasma membrane | 59.56 | 62.29 |
CDX90174 | Canola | cytosol, endoplasmic reticulum | 56.83 | 60.82 |
CDY43324 | Canola | cytosol, endoplasmic reticulum | 57.38 | 60.69 |
Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 57.92 | 60.23 |
Bra030125.1-P | Field mustard | cytosol, extracellular | 57.92 | 59.89 |
Solyc02g076800.1.1 | Tomato | extracellular | 62.3 | 59.69 |
CDY15646 | Canola | cytosol, extracellular | 57.38 | 59.32 |
CDX94651 | Canola | cytosol, extracellular | 57.38 | 59.32 |
GSMUA_Achr4P08040_001 | Banana | extracellular | 53.55 | 57.99 |
KRH21271 | Soybean | cytosol, nucleus, plastid | 61.75 | 57.95 |
Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 56.83 | 57.46 |
GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 50.27 | 55.76 |
PGSC0003DMT400011206 | Potato | extracellular | 57.92 | 55.5 |
AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 57.92 | 54.92 |
GSMUA_Achr6P22730_001 | Banana | cytosol | 48.63 | 53.94 |
VIT_06s0004g07460.t01 | Wine grape | extracellular, golgi | 43.17 | 53.38 |
TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 53.01 | 51.05 |
TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 53.01 | 50.0 |
TraesCS3D01G295400.1 | Wheat | extracellular | 51.91 | 50.0 |
Os01t0758500-01 | Rice | cytosol | 52.46 | 49.23 |
GSMUA_Achr7P25280_001 | Banana | extracellular | 46.45 | 48.85 |
Zm00001d043399_P001 | Maize | extracellular | 52.46 | 48.48 |
HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 50.82 | 47.69 |
EES03643 | Sorghum | endoplasmic reticulum, extracellular | 50.27 | 44.23 |
Zm00001d012700_P001 | Maize | extracellular | 49.18 | 41.86 |
Protein Annotations
EntrezGene:100265230 | wikigene:100265230 | MapMan:35.2 | ProteinID:CCB55687 | ProteinID:CCB55687.1 | InterPro:DUF4228_plant |
UniProt:F6HM99 | EMBL:FN595992 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
GO:GO:0009507 | GO:GO:0009536 | EntrezGene:LOC100265230 | wikigene:LOC100265230 | PFAM:PF14009 | PANTHER:PTHR33052 |
PANTHER:PTHR33052:SF3 | UniParc:UPI0002107FBA | ArrayExpress:VIT_10s0003g01310 | EnsemblPlantsGene:VIT_10s0003g01310 | EnsemblPlants:VIT_10s0003g01310.t01 | RefSeq:XP_002272922 |
RefSeq:XP_002272922.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:2640521..2646911
Molecular Weight (calculated)
20530.5 Da
IEP (calculated)
10.317
GRAVY (calculated)
-0.723
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MKNTIRCCIS CILPCGALDV VRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSSSEE GVVPKIVVVP PDAELQRGKI YFLMPIPPPP EKTRSRSSTR
101: KKRRDSESNN TNTHHHHSNT ANNTISMTNL LISDRYLSEI LSEKISTQRD RRRGRVGVWR PHLESISETP SGGQGRDPRE TWN
101: KKRRDSESNN TNTHHHHSNT ANNTISMTNL LISDRYLSEI LSEKISTQRD RRRGRVGVWR PHLESISETP SGGQGRDPRE TWN
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.