Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29195.1 | CDY24170 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | CDY36943 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15646 | Canola | cytosol, extracellular | 94.92 | 94.92 |
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 68.36 | 69.94 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 65.54 | 67.84 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 65.54 | 60.1 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 59.32 | 57.38 |
| KRH42866 | Soybean | extracellular, plasma membrane | 56.5 | 57.14 |
| KRH58967 | Soybean | cytosol, golgi | 56.5 | 57.14 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 54.24 | 56.8 |
| KRH11017 | Soybean | extracellular | 55.93 | 56.25 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 51.98 | 55.76 |
| Solyc02g076800.1.1 | Tomato | extracellular | 56.5 | 52.36 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 48.59 | 52.12 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 57.06 | 51.79 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 53.67 | 48.97 |
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 52.54 | 48.95 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 51.98 | 48.42 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 49.15 | 48.07 |
| PGSC0003DMT400011206 | Potato | extracellular | 51.41 | 47.64 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 46.33 | 47.13 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 50.28 | 45.64 |
| CDY54890 | Canola | extracellular, golgi | 43.5 | 45.56 |
| CDY10237 | Canola | extracellular, golgi | 43.5 | 45.56 |
| Zm00001d043399_P001 | Maize | extracellular | 50.85 | 45.45 |
| Os01t0758500-01 | Rice | cytosol | 49.72 | 45.13 |
| CDX86506 | Canola | extracellular, golgi | 42.37 | 44.64 |
| CDY09944 | Canola | extracellular, golgi | 41.81 | 44.31 |
| EES03643 | Sorghum | endoplasmic reticulum, extracellular | 51.98 | 44.23 |
| CDY15595 | Canola | extracellular, golgi | 40.68 | 43.9 |
| CDY24020 | Canola | extracellular | 38.42 | 43.04 |
| CDY02050 | Canola | extracellular | 38.42 | 42.5 |
| CDX97836 | Canola | extracellular | 37.85 | 41.61 |
| CDX84851 | Canola | extracellular | 36.72 | 41.14 |
| CDX84850 | Canola | extracellular | 36.72 | 41.14 |
| Zm00001d012700_P001 | Maize | extracellular | 49.72 | 40.93 |
| CDY29687 | Canola | extracellular | 39.55 | 39.11 |
Protein Annotations
| EnsemblPlants:CDX94651 | EnsemblPlantsGene:GSBRNA2T00157981001 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF26 | PFAM:PF14009 |
| ProteinID:CDX94651 | ProteinID:CDX94651.1 | SEG:seg | UniParc:UPI0004EC230F | MapMan:35.2 | : |
Description
BnaC07g10070D
Coordinates
chrLK031883:+:772746..773279
Molecular Weight (calculated)
19893.8 Da
IEP (calculated)
8.934
GRAVY (calculated)
-0.677
Length
177 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETLRCCIA CILPCGALDV IRIVHSNGYV EEISGTITAS EVMKAHPKHV LKKPSSPPSS DHDDVISATK IVIVPPEAEL QRGKIYFLIP ATKPDKEKIR
101: RDRSNANAVK KRSRHHLEDV DDHKSNGENN GKDKDSSVLI SDRYLTEILS EKVATQRDRR KGRVGVWRPH LESINED
101: RDRSNANAVK KRSRHHLEDV DDHKSNGENN GKDKDSSVLI SDRYLTEILS EKVATQRDRR KGRVGVWRPH LESINED
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.