CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	KRH03466	AT3G47620.1	21798944
AT1G29195.1	KRH54542	AT3G47620.1	21798944
AT1G29195.1	KRH56919	AT3G47620.1	21798944
AT1G29195.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11017	Soybean	extracellular	66.67	73.86
KRH58967	Soybean	cytosol, golgi	61.03	68.0
KRH42866	Soybean	extracellular, plasma membrane	57.44	64.0
VIT_10s0003g01310.t01	Wine grape	extracellular	57.95	61.75
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	53.85	58.01
Solyc02g076800.1.1	Tomato	extracellular	56.41	57.59
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	48.72	57.58
Bra030125.1-P	Field mustard	cytosol, extracellular	51.79	57.06
CDX94651	Canola	cytosol, extracellular	51.79	57.06
CDY15646	Canola	cytosol, extracellular	51.28	56.5
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	54.36	54.92
PGSC0003DMT400011206	Potato	extracellular	52.31	53.4
GSMUA_Achr4P08040_001	Banana	extracellular	46.15	53.25
CDX90174	Canola	cytosol, endoplasmic reticulum	46.67	53.22
CDY43324	Canola	cytosol, endoplasmic reticulum	46.15	52.02
GSMUA_Achr6P22730_001	Banana	cytosol	43.59	51.52
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	46.15	51.14
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	47.69	47.69
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	47.18	47.42
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	46.15	47.37
Os01t0758500-01	Rice	cytosol	47.18	47.18
TraesCS3D01G295400.1	Wheat	extracellular	45.64	46.84
Zm00001d043399_P001	Maize	extracellular	47.18	46.46
GSMUA_Achr7P25280_001	Banana	extracellular	41.03	45.98
KRG98199	Soybean	extracellular	38.46	45.45
EES03643	Sorghum	endoplasmic reticulum, extracellular	46.15	43.27
KRH30160	Soybean	extracellular	36.92	43.11
KRH72764	Soybean	extracellular	37.44	42.69
KRH17122	Soybean	extracellular, golgi	35.9	41.92
Zm00001d012700_P001	Maize	extracellular	45.13	40.93

Protein Annotations

EMBL:ACUP02008352	EnsemblPlants:KRH21271	EnsemblPlantsGene:GLYMA_13G229500	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF3
PFAM:PF14009	ProteinID:KRH21271	ProteinID:KRH21271.1	SEG:seg	UniParc:UPI000233ADD0	UniProt:I1M1T7
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:34161998..34162909

Molecular Weight (calculated)

21897.0 Da

IEP (calculated)

9.315

GRAVY (calculated)

-0.777

Length

195 amino acids

Sequence
(BLAST)

001: MRIEILEEEF EEEGMRNSIR CCISCILPCG ALDVIRIVHS NGRVEEISGT IKASEIMKAH PKHVLKKPSS PSTQDGVVPK IVVVPPDADL QRGKIYFLMP
101: LPSPPSEKNS SHRQRSSSGK KKRKEHHNDN RNNNNNNNNN NATSVANLLA SNERYLTEVL SDKVSTQRDR TRGRVAVWRP HLESISESPS LPDNM

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.