Factsheet for GSMUA_Achr6P22730_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	64.85	64.85
GSMUA_Achr4P08040_001	Banana	extracellular	62.42	60.95
GSMUA_Achr7P25280_001	Banana	extracellular	53.94	51.15
Bra030125.1-P	Field mustard	cytosol, extracellular	53.33	49.72
CDX90174	Canola	cytosol, endoplasmic reticulum	51.52	49.71
KRH58967	Soybean	cytosol, golgi	52.12	49.14
CDY43324	Canola	cytosol, endoplasmic reticulum	51.52	49.13
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	41.82	48.94
KRH11017	Soybean	extracellular	52.12	48.86
VIT_10s0003g01310.t01	Wine grape	extracellular	53.94	48.63
CDX94651	Canola	cytosol, extracellular	52.12	48.59
CDY15646	Canola	cytosol, extracellular	52.12	48.59
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	51.52	48.3
KRH42866	Soybean	extracellular, plasma membrane	50.91	48.0
Solyc02g076800.1.1	Tomato	extracellular	55.15	47.64
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	41.82	47.26
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	39.39	46.76
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	50.91	46.41
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	54.55	46.39
GSMUA_Achr11P...	Banana	cytosol, extracellular	40.0	46.15
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	53.94	45.64
Os01t0758500-01	Rice	cytosol	53.94	45.64
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	52.12	45.26
TraesCS3D01G295400.1	Wheat	extracellular	52.12	45.26
Zm00001d043399_P001	Maize	extracellular	53.94	44.95
PGSC0003DMT400011206	Potato	extracellular	51.52	44.5
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	51.52	44.04
KRH21271	Soybean	cytosol, nucleus, plastid	51.52	43.59
EES03643	Sorghum	endoplasmic reticulum, extracellular	53.94	42.79
GSMUA_Achr11P...	Banana	cytosol	43.03	42.77
Zm00001d012700_P001	Maize	extracellular	51.52	39.53
GSMUA_Achr9P04640_001	Banana	extracellular	35.15	38.16

Protein Annotations

EnsemblPlants:GSMUA_Achr6P22730_001	EnsemblPlants:GSMUA_Achr6T22730_001	EnsemblPlantsGene:GSMUA_Achr6G22730_001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26
PFAM:PF14009	SEG:seg	UniParc:UPI0002949833	UniProt:M0T9C1	MapMan:35.2	:

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G22730_001]

Coordinates

chr6:+:21071368..21071865

Molecular Weight (calculated)

18153.1 Da

IEP (calculated)

10.482

GRAVY (calculated)

-0.448

Length

165 amino acids

Sequence
(BLAST)

001: MKDSIRCCIS CIFPCGGLDV VRIVHASGRV EEISGSVSAG EVMRAYPKHV LRKPPSASLD GVVSPKAVIL PPSAELQRGK IYFLMPVSSD KAVPQTTTSA
101: TKRKSWKKKK EGKEGEGSWE TSTDKKRLLP EVLQEKASAQ KNRRRGRVGV WRPHLESISE VSIDL

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.