Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra018126.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29195.1 | Bra018126.1-P | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 92.61 | 94.22 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 80.68 | 83.04 |
| Bra030125.1-P | Field mustard | cytosol, extracellular | 68.75 | 68.36 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 64.2 | 58.55 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 60.23 | 57.92 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 53.98 | 56.21 |
| KRH11017 | Soybean | extracellular | 53.98 | 53.98 |
| KRH58967 | Soybean | cytosol, golgi | 53.41 | 53.71 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 50.0 | 53.33 |
| KRH42866 | Soybean | extracellular, plasma membrane | 51.7 | 52.0 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 48.3 | 51.52 |
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 53.98 | 50.0 |
| Solyc02g076800.1.1 | Tomato | extracellular | 53.41 | 49.21 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 52.27 | 48.42 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 49.43 | 48.07 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 52.84 | 47.94 |
| PGSC0003DMT400011206 | Potato | extracellular | 51.7 | 47.64 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 46.02 | 46.55 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 51.14 | 46.15 |
| Os01t0758500-01 | Rice | cytosol | 50.57 | 45.64 |
| Zm00001d043399_P001 | Maize | extracellular | 51.14 | 45.45 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 50.0 | 45.13 |
| EES03643 | Sorghum | endoplasmic reticulum, extracellular | 52.84 | 44.71 |
| Bra015540.1-P | Field mustard | extracellular, golgi | 39.77 | 41.42 |
| Bra031549.1-P | Field mustard | extracellular, golgi | 39.2 | 41.32 |
| Zm00001d012700_P001 | Maize | extracellular | 49.43 | 40.47 |
| Bra018326.1-P | Field mustard | extracellular | 40.34 | 39.89 |
| Bra030668.1-P | Field mustard | extracellular, golgi | 36.36 | 39.02 |
| Bra022784.1-P | Field mustard | extracellular | 38.64 | 38.64 |
| Bra021621.1-P | Field mustard | extracellular | 38.64 | 37.99 |
Protein Annotations
| EnsemblPlants:Bra010845.1 | EnsemblPlants:Bra010845.1-P | EnsemblPlantsGene:Bra010845 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF26 |
| PFAM:PF14009 | SEG:seg | UniParc:UPI00025454B6 | UniProt:M4D2Z2 | MapMan:35.2 | : |
Description
AT1G29195 (E=1e-044) | unknown protein
Coordinates
chrA08:-:16758368..16758898
Molecular Weight (calculated)
19835.8 Da
IEP (calculated)
9.490
GRAVY (calculated)
-0.705
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETIRCCIA CILPCGALDV IRIIHSNGHV EEISGTITAG EVMKAHPKHV LKKPSSSQSD HQERGDLISA TKIVIVPPEA ELQRGKIYFL VLAAKSDKRN
101: AKAVKKRSQT RRQREEGHDD DKSNGDKDKS YDKDVSLLIS DRYLTEILSE KIATQKERRK GRVGVWRPHL ESINED
101: AKAVKKRSQT RRQREEGHDD DKSNGDKDKS YDKDVSLLIS DRYLTEILSE KIATQKERRK GRVGVWRPHL ESINED
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.