Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29195.1 | EER88112 | AT3G47620.1 | 21798944 |
| AT1G29195.1 | EES07255 | AT3G47620.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G330000.1 | Wheat | cytosol, extracellular | 66.83 | 73.16 |
| TraesCS3D01G295400.1 | Wheat | extracellular | 66.35 | 72.63 |
| TraesCS3A01G306500.1 | Wheat | cytosol, extracellular | 64.42 | 69.07 |
| HORVU3Hr1G073050.1 | Barley | cytosol, endoplasmic reticulum | 63.94 | 68.21 |
| Os01t0758500-01 | Rice | cytosol | 62.98 | 67.18 |
| Zm00001d012700_P001 | Maize | extracellular | 64.42 | 62.33 |
| GSMUA_Achr6P26830_001 | Banana | cytosol, endoplasmic reticulum, plastid | 48.56 | 61.21 |
| GSMUA_Achr4P08040_001 | Banana | extracellular | 48.56 | 59.76 |
| CDY43324 | Canola | cytosol, endoplasmic reticulum | 45.19 | 54.34 |
| GSMUA_Achr6P22730_001 | Banana | cytosol | 42.79 | 53.94 |
| CDX90174 | Canola | cytosol, endoplasmic reticulum | 44.23 | 53.8 |
| Bra010845.1-P | Field mustard | cytosol, endoplasmic reticulum | 44.71 | 52.84 |
| KRH42866 | Soybean | extracellular, plasma membrane | 43.75 | 52.0 |
| Bra030125.1-P | Field mustard | cytosol, extracellular | 44.23 | 51.98 |
| CDX94651 | Canola | cytosol, extracellular | 44.23 | 51.98 |
| CDY15646 | Canola | cytosol, extracellular | 44.23 | 51.98 |
| KRH11017 | Soybean | extracellular | 43.27 | 51.14 |
| KRH58967 | Soybean | cytosol, golgi | 42.79 | 50.86 |
| VIT_10s0003g01310.t01 | Wine grape | extracellular | 44.23 | 50.27 |
| GSMUA_Achr7P25280_001 | Banana | extracellular | 41.83 | 50.0 |
| Solyc03g006160.1.1 | Tomato | cytosol, extracellular, nucleus | 41.35 | 47.51 |
| AT1G29195.1 | Thale cress | cytosol, endoplasmic reticulum | 43.27 | 46.63 |
| Solyc02g076800.1.1 | Tomato | extracellular | 42.79 | 46.6 |
| KRH21271 | Soybean | cytosol, nucleus, plastid | 43.27 | 46.15 |
| PGSC0003DMT400011206 | Potato | extracellular | 42.31 | 46.07 |
| EES17778 | Sorghum | extracellular, golgi | 33.17 | 40.12 |
| EES03819 | Sorghum | extracellular | 32.21 | 37.85 |
| EER95013 | Sorghum | extracellular, vacuole | 30.29 | 37.72 |
| EES02407 | Sorghum | extracellular, golgi, plasma membrane | 32.21 | 36.41 |
| EES18380 | Sorghum | extracellular | 31.73 | 35.48 |
Protein Annotations
| EnsemblPlants:EES03643 | EnsemblPlantsGene:SORBI_3003G302000 | EntrezGene:8079223 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:DUF4228_plant | PANTHER:PTHR33052 | PANTHER:PTHR33052:SF3 |
| PFAM:PF14009 | ProteinID:EES03643 | ProteinID:EES03643.1 | RefSeq:XP_002458523.1 | SEG:seg | UniParc:UPI0001A84DD6 |
| UniProt:C5XKS7 | MapMan:35.2 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:-:63284245..63285111
Molecular Weight (calculated)
22139.9 Da
IEP (calculated)
10.034
GRAVY (calculated)
-0.318
Length
208 amino acids
Sequence
(BLAST)
(BLAST)
001: METIKCCIAC ILPCGALDVV RIVHSNGRVE EISGGPVLAG EIMKAYPKHV LRKPPSTCPA DGGAIVVQKP VILPPNAELQ RGKIYFLMPV MATAPAPAPE
101: KPAAAKQQPP PPPAGQTTAA AAASVARRRR RRKDHPAARD GGAAAACSSR AAAGLAPAPA EDEKERLLAN ERYLSEIMKE KASTARDRRR GRVAVWRPHL
201: ESITEDDL
101: KPAAAKQQPP PPPAGQTTAA AAASVARRRR RRKDHPAARD GGAAAACSSR AAAGLAPAPA EDEKERLLAN ERYLSEIMKE KASTARDRRR GRVAVWRPHL
201: ESITEDDL
001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED
Arabidopsis Description
At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]
SUBAcon: [endoplasmic reticulum,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.