Factsheet for GSMUA_Achr7P25280_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
extracellular 5
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08040_001	Banana	extracellular	59.2	60.95
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	55.17	58.18
GSMUA_Achr6P22730_001	Banana	cytosol	51.15	53.94
CDX90174	Canola	cytosol, endoplasmic reticulum	46.55	47.37
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	39.66	47.26
KRH42866	Soybean	extracellular, plasma membrane	47.13	46.86
CDY43324	Canola	cytosol, endoplasmic reticulum	46.55	46.82
VIT_10s0003g01310.t01	Wine grape	extracellular	48.85	46.45
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	51.72	46.39
CDX94651	Canola	cytosol, extracellular	47.13	46.33
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	36.78	46.04
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	46.55	46.02
KRH11017	Soybean	extracellular	46.55	46.02
Zm00001d043399_P001	Maize	extracellular	52.3	45.96
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	50.0	45.79
Bra030125.1-P	Field mustard	cytosol, extracellular	46.55	45.76
CDY15646	Canola	cytosol, extracellular	46.55	45.76
KRH58967	Soybean	cytosol, golgi	45.98	45.71
TraesCS3D01G295400.1	Wheat	extracellular	49.43	45.26
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	36.21	44.68
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	49.43	44.1
Os01t0758500-01	Rice	cytosol	49.43	44.1
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	48.85	44.04
GSMUA_Achr11P...	Banana	cytosol, extracellular	35.63	43.36
Solyc02g076800.1.1	Tomato	extracellular	46.55	42.41
EES03643	Sorghum	endoplasmic reticulum, extracellular	50.0	41.83
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	43.1	41.44
KRH21271	Soybean	cytosol, nucleus, plastid	45.98	41.03
Zm00001d012700_P001	Maize	extracellular	50.0	40.47
PGSC0003DMT400011206	Potato	extracellular	44.25	40.31
GSMUA_Achr11P...	Banana	cytosol	37.93	39.76
GSMUA_Achr9P04640_001	Banana	extracellular	30.46	34.87

Protein Annotations

EnsemblPlants:GSMUA_Achr7P25280_001	EnsemblPlants:GSMUA_Achr7T25280_001	EnsemblPlantsGene:GSMUA_Achr7G25280_001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26
PFAM:PF14009	SEG:seg	SignalP:SignalP-noTM	UniParc:UPI000295926A	UniProt:M0TKL4	MapMan:35.2

Description

Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G25280_001]

Coordinates

chr7:+:26972824..26973348

Molecular Weight (calculated)

19007.2 Da

IEP (calculated)

10.232

GRAVY (calculated)

-0.229

Length

174 amino acids

Sequence
(BLAST)

001: MKAPIRCCIS CISCILPCGA LDLIRIVHAS GHVEEISGTV TAGDIMRAYP KHVLRRPLSP SSTNGVVVPE AVILPPSAEL RKGKIYFLIP VAPPAPGKAR
101: SGMKGTTRRS WKKEADSQGQ ATEKTRLLHS EPYSSDTLSK KASTQTCRRR GRIAVWRPRL ESISEISDDL CVNF

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.