Factsheet for TraesCS3A01G306500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306500.1
TraesCS6B01G334900.1
TraesCS6D01G285600.1
TraesCS7B01G091900.1
TraesCS7D01G187600.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	TraesCS6A01G306500.1	AT3G47620.1	21798944
AT1G29195.1	TraesCS6B01G334900.1	AT3G47620.1	21798944
AT1G29195.1	TraesCS6D01G285600.1	AT3G47620.1	21798944
AT1G29195.1	TraesCS7B01G091900.1	AT3G47620.1	21798944
AT1G29195.1	TraesCS7D01G187600.1	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G295400.1	Wheat	extracellular	87.11	88.95
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	85.05	86.84
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	76.8	76.41
Zm00001d043399_P001	Maize	extracellular	77.84	76.26
Os01t0758500-01	Rice	cytosol	72.68	72.31
EES03643	Sorghum	endoplasmic reticulum, extracellular	69.07	64.42
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	52.58	61.82
GSMUA_Achr4P08040_001	Banana	extracellular	51.55	59.17
Zm00001d012700_P001	Maize	extracellular	64.95	58.6
CDY43324	Canola	cytosol, endoplasmic reticulum	48.97	54.91
Bra030125.1-P	Field mustard	cytosol, extracellular	50.0	54.8
GSMUA_Achr6P22730_001	Banana	cytosol	46.39	54.55
CDY15646	Canola	cytosol, extracellular	49.48	54.24
CDX94651	Canola	cytosol, extracellular	48.97	53.67
CDX90174	Canola	cytosol, endoplasmic reticulum	46.91	53.22
VIT_10s0003g01310.t01	Wine grape	extracellular	50.0	53.01
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	47.94	52.84
KRH42866	Soybean	extracellular, plasma membrane	46.91	52.0
GSMUA_Achr7P25280_001	Banana	extracellular	46.39	51.72
KRH11017	Soybean	extracellular	46.91	51.7
KRH58967	Soybean	cytosol, golgi	46.39	51.43
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	48.45	48.7
Solyc02g076800.1.1	Tomato	extracellular	47.42	48.17
KRH21271	Soybean	cytosol, nucleus, plastid	47.42	47.18
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	43.81	46.96
PGSC0003DMT400011206	Potato	extracellular	43.81	44.5
TraesCS1A01G111500.1	Wheat	extracellular	33.51	38.24
TraesCS3A01G347700.1	Wheat	extracellular	32.99	38.1
TraesCS4A01G114800.1	Wheat	extracellular	32.47	36.63
TraesCS3A01G098800.1	Wheat	extracellular	31.44	35.88
TraesCS1A01G298300.1	Wheat	extracellular, vacuole	30.93	33.9

Protein Annotations

EnsemblPlants:TraesCS3A01G306500.1	EnsemblPlantsGene:TraesCS3A01G306500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF3	PFAM:PF14009
SEG:seg	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:544190835..544191881

Molecular Weight (calculated)

20619.2 Da

IEP (calculated)

10.303

GRAVY (calculated)

-0.320

Length

194 amino acids

Sequence
(BLAST)

001: METIRCCIAC ILPCGALDVV RIVHSNGRVE EISGPVLAGE IMKAYPKHVL RKPPSTCPAD GGAGIVVQKP VILPPNAELQ KGKIYFLMPV MAPAPDKPAA
101: KPKAPAPAPP AAAPAPAARR RRRRKESAEA AGGGGNNAAA ASLQSAGGEK ERLLANERYL SEIMKEKAST ARDRRRGRVA VWRPHLESIT EDDL

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.