Factsheet for GSMUA_Achr6P26830_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, cytosol

Predictor Summary:

plastid 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P00500_001
GSMUA_Achr6P02720_001
GSMUA_Achr7P17990_001
GSMUA_Achr7P20990_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	GSMUA_Achr4P00500_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr6P02720_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P17990_001	AT3G47620.1	21798944
AT1G29195.1	GSMUA_Achr7P20990_001	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08040_001	Banana	extracellular	67.88	66.27
GSMUA_Achr6P22730_001	Banana	cytosol	64.85	64.85
GSMUA_Achr7P25280_001	Banana	extracellular	58.18	55.17
KRH58967	Soybean	cytosol, golgi	57.58	54.29
KRH42866	Soybean	extracellular, plasma membrane	56.97	53.71
KRH11017	Soybean	extracellular	56.97	53.41
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	61.82	52.58
Bra030125.1-P	Field mustard	cytosol, extracellular	56.36	52.54
CDY15646	Canola	cytosol, extracellular	55.76	51.98
CDX94651	Canola	cytosol, extracellular	55.76	51.98
TraesCS3D01G295400.1	Wheat	extracellular	59.39	51.58
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	59.39	51.58
CDX90174	Canola	cytosol, endoplasmic reticulum	53.33	51.46
Solyc02g076800.1.1	Tomato	extracellular	59.39	51.31
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	60.61	51.28
CDY43324	Canola	cytosol, endoplasmic reticulum	53.33	50.87
Os01t0758500-01	Rice	cytosol	60.0	50.77
Zm00001d043399_P001	Maize	extracellular	60.61	50.51
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	55.15	50.28
VIT_10s0003g01310.t01	Wine grape	extracellular	55.76	50.27
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	53.33	50.0
PGSC0003DMT400011206	Potato	extracellular	57.58	49.74
GSMUA_Achr11P...	Banana	cytosol, extracellular	42.42	48.95
KRH21271	Soybean	cytosol, nucleus, plastid	57.58	48.72
GSMUA_Achr5P29500_001	Banana	extracellular, vacuole	43.03	48.63
EES03643	Sorghum	endoplasmic reticulum, extracellular	61.21	48.56
GSMUA_Achr6P32750_001	Banana	extracellular, vacuole	40.61	47.52
GSMUA_Achr5P28030_001	Banana	cytosol, extracellular	40.0	47.48
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	53.33	45.6
GSMUA_Achr11P...	Banana	cytosol	45.45	45.18
Zm00001d012700_P001	Maize	extracellular	58.18	44.65
GSMUA_Achr9P04640_001	Banana	extracellular	35.76	38.82

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26830_001	EnsemblPlants:GSMUA_Achr6T26830_001	EnsemblPlantsGene:GSMUA_Achr6G26830_001	InterPro:DUF4228_plant	PANTHER:PTHR33052	PANTHER:PTHR33052:SF26
PFAM:PF14009	SEG:seg	UniParc:UPI000295B326	UniProt:M0TAH8	MapMan:35.2	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26830_001]

Coordinates

chr6:+:27469013..27469837

Molecular Weight (calculated)

18138.9 Da

IEP (calculated)

9.994

GRAVY (calculated)

-0.365

Length

165 amino acids

Sequence
(BLAST)

001: MRDTIRCCIS CILPCGALDV IRIVHASGRV EEISGTVSAG DIMQAYPKHV LRKPPSASLD GVEAPKAVIL PPDAELQRGK IYFLVPVASS APVKETTAAR
101: GRRRRRKKEG ESNAATADKT MLLLNERYLS EILSEKASSY RDKRRGRVGV WRPHLDSISE GSNEL

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.