CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 3
nucleus 1
mitochondrion 1
peroxisome 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH03466
KRH54542
KRH56919
KRH63357

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G29195.1	KRH03466	AT3G47620.1	21798944
AT1G29195.1	KRH54542	AT3G47620.1	21798944
AT1G29195.1	KRH56919	AT3G47620.1	21798944
AT1G29195.1	KRH63357	AT3G47620.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH42866	Soybean	extracellular, plasma membrane	74.86	74.86
KRH11017	Soybean	extracellular	66.86	66.48
VIT_10s0003g01310.t01	Wine grape	extracellular	64.57	61.75
KRH21271	Soybean	cytosol, nucleus, plastid	68.0	61.03
GSMUA_Achr6P26830_001	Banana	cytosol, endoplasmic reticulum, plastid	54.29	57.58
Solyc02g076800.1.1	Tomato	extracellular	62.29	57.07
Bra030125.1-P	Field mustard	cytosol, extracellular	57.71	57.06
CDX90174	Canola	cytosol, endoplasmic reticulum	55.43	56.73
CDX94651	Canola	cytosol, extracellular	57.14	56.5
CDY15646	Canola	cytosol, extracellular	57.14	56.5
Solyc03g006160.1.1	Tomato	cytosol, extracellular, nucleus	58.29	56.35
GSMUA_Achr4P08040_001	Banana	extracellular	53.14	55.03
Bra010845.1-P	Field mustard	cytosol, endoplasmic reticulum	53.71	53.41
CDY43324	Canola	cytosol, endoplasmic reticulum	52.57	53.18
GSMUA_Achr6P22730_001	Banana	cytosol	49.14	52.12
PGSC0003DMT400011206	Potato	extracellular	56.57	51.83
AT1G29195.1	Thale cress	cytosol, endoplasmic reticulum	57.14	51.81
TraesCS3B01G330000.1	Wheat	cytosol, extracellular	50.86	46.84
TraesCS3A01G306500.1	Wheat	cytosol, extracellular	51.43	46.39
HORVU3Hr1G073050.1	Barley	cytosol, endoplasmic reticulum	51.43	46.15
GSMUA_Achr7P25280_001	Banana	extracellular	45.71	45.98
TraesCS3D01G295400.1	Wheat	extracellular	49.71	45.79
Os01t0758500-01	Rice	cytosol	50.86	45.64
KRH30160	Soybean	extracellular	42.29	44.31
Zm00001d043399_P001	Maize	extracellular	49.71	43.94
KRG98199	Soybean	extracellular	40.57	43.03
EES03643	Sorghum	endoplasmic reticulum, extracellular	50.86	42.79
KRH17122	Soybean	extracellular, golgi	40.57	42.52
KRH72764	Soybean	extracellular	41.14	42.11
Zm00001d012700_P001	Maize	extracellular	49.14	40.0

Protein Annotations

EMBL:ACUP02003295	EnsemblPlants:KRH58967	EnsemblPlantsGene:GLYMA_05G158500	EntrezGene:100807034	InterPro:DUF4228_plant	PANTHER:PTHR33052
PANTHER:PTHR33052:SF3	PFAM:PF14009	ProteinID:KRH58967	ProteinID:KRH58967.1	SEG:seg	UniParc:UPI0002339F4E
UniProt:I1K3Z6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:35062753..35064458

Molecular Weight (calculated)

19510.9 Da

IEP (calculated)

10.590

GRAVY (calculated)

-0.567

Length

175 amino acids

Sequence
(BLAST)

001: MRNCIRCCIS CILPCGALDV IRIVHSNGRV EEIGGTIKAS DVMKAHPKHV LKKPCSSAAD AAEGGVGGGV PKIVVVPPDA ELQRGKIYFL MPLPPSPPQE
101: KNQQRRKKKK KEHRERTRNN TNVSTTMSMT SLLVSDRYLN DILSEKVSTQ RDRRRGRVAV WRPHLESISE SPPHM

Best Arabidopsis Sequence Match ( AT1G29195.1 )
(BLAST)

001: MKETIRCCIA CILPCGALDV IRIVHSNGHV EEISGTITAS EIMKAHPKHV LKKPSSPTSD HDERDVISAT KIVIVPPEAE LQRGKIYFLM PATKSDKCAG
101: GGKIRREKSN ANAVVKKRSQ YRRQHRDGDE KCNGGESNDV KDKNYEKDLL ISSDRYLTEI LSEKVATQKD RRKGRVGVWR PHLESISEII TED

Arabidopsis Description

At1g29190/F28N24_12 [Source:UniProtKB/TrEMBL;Acc:Q9LP48]
SUBAcon: [endoplasmic reticulum,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.