Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH54542 | Soybean | nucleus | 91.96 | 89.71 |
VIT_17s0000g06020.t01 | Wine grape | nucleus | 63.57 | 68.75 |
KRH56919 | Soybean | nucleus | 67.84 | 64.9 |
KRH03466 | Soybean | nucleus | 66.58 | 64.16 |
Solyc03g116320.2.1 | Tomato | nucleus | 60.55 | 58.92 |
PGSC0003DMT400001613 | Potato | nucleus | 61.06 | 58.7 |
GSMUA_Achr4P00500_001 | Banana | nucleus | 39.45 | 57.72 |
GSMUA_Achr6P02720_001 | Banana | nucleus | 38.69 | 57.04 |
CDY36943 | Canola | nucleus | 26.38 | 55.56 |
GSMUA_Achr7P20990_001 | Banana | nucleus | 37.19 | 55.22 |
CDY24170 | Canola | nucleus | 31.66 | 51.85 |
KRH49755 | Soybean | nucleus | 25.63 | 51.52 |
KRH74835 | Soybean | nucleus | 45.73 | 47.27 |
Os06t0226700-01 | Rice | nucleus | 44.97 | 46.25 |
KRH70699 | Soybean | nucleus | 49.25 | 46.23 |
EER88112 | Sorghum | nucleus | 44.72 | 45.18 |
Zm00001d037221_P001 | Maize | cytosol, nucleus, peroxisome | 42.46 | 44.59 |
Zm00001d052256_P001 | Maize | cytosol, nucleus, peroxisome | 43.47 | 44.47 |
Bra018126.1-P | Field mustard | nucleus | 52.01 | 44.42 |
GSMUA_Achr7P17990_001 | Banana | nucleus | 37.19 | 44.05 |
KRG99108 | Soybean | nucleus | 30.15 | 43.96 |
EES07255 | Sorghum | nucleus | 43.72 | 43.72 |
Zm00001d044836_P001 | Maize | nucleus | 38.94 | 43.42 |
TraesCS6D01G285600.1 | Wheat | nucleus | 43.72 | 43.39 |
TraesCS6A01G306500.1 | Wheat | nucleus | 43.97 | 43.32 |
HORVU6Hr1G075650.1 | Barley | nucleus | 43.72 | 43.28 |
TraesCS6B01G334900.1 | Wheat | nucleus | 43.47 | 43.03 |
Zm00001d018045_P001 | Maize | cytosol, nucleus, peroxisome | 43.22 | 43.0 |
KRH45889 | Soybean | nucleus | 30.65 | 42.66 |
Os02t0747400-01 | Rice | nucleus | 43.72 | 42.44 |
TraesCS7B01G091900.1 | Wheat | cytosol, nucleus, peroxisome | 39.45 | 42.2 |
AT3G47620.1 | Thale cress | nucleus | 51.01 | 41.51 |
TraesCS7D01G187600.1 | Wheat | cytosol | 41.21 | 41.0 |
HORVU7Hr1G038130.1 | Barley | nucleus | 41.21 | 41.0 |
KRH32533 | Soybean | plastid | 18.84 | 39.47 |
KRH30615 | Soybean | cytosol | 15.08 | 38.46 |
KRH19921 | Soybean | plastid | 17.59 | 37.84 |
KRG89108 | Soybean | nucleus, plastid | 21.36 | 36.64 |
KRG90619 | Soybean | nucleus | 22.11 | 36.36 |
KRH36141 | Soybean | nucleus | 22.11 | 35.77 |
KRH40904 | Soybean | nucleus | 21.11 | 35.15 |
KRH40902 | Soybean | nucleus | 21.11 | 35.0 |
KRH06094 | Soybean | plastid | 29.15 | 32.13 |
KRG94577 | Soybean | nucleus | 24.87 | 30.0 |
KRH06910 | Soybean | nucleus | 24.37 | 28.12 |
KRH35393 | Soybean | nucleus | 20.85 | 26.69 |
KRH26343 | Soybean | nucleus, plastid | 28.89 | 26.5 |
KRG91429 | Soybean | nucleus | 21.36 | 26.07 |
KRH57263 | Soybean | nucleus | 21.36 | 24.57 |
KRH03994 | Soybean | nucleus | 20.85 | 24.41 |
KRH48289 | Soybean | nucleus | 20.1 | 23.88 |
KRH65181 | Soybean | nucleus | 20.1 | 23.81 |
Protein Annotations
EntrezGene:100809154 | MapMan:15.5.19 | EMBL:ACUP02002668 | EnsemblPlantsGene:GLYMA_04G170600 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
GO:GO:0009987 | InterPro:IPR017887 | UniProt:K7KKP2 | EnsemblPlants:KRH63357 | ProteinID:KRH63357 | ProteinID:KRH63357.1 |
PFAM:PF03634 | PFscan:PS51369 | PANTHER:PTHR31072 | PANTHER:PTHR31072:SF40 | InterPro:TF_TCP_subgr | InterPro:Transcription_factor_TCP |
UniParc:UPI000233A519 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:42715265..42717152
Molecular Weight (calculated)
43727.6 Da
IEP (calculated)
7.747
GRAVY (calculated)
-0.819
Length
398 amino acids
Sequence
(BLAST)
(BLAST)
001: MKGGSDDFHH HHHHHHHNHH RQNFPFQLLE KKEDQQDPSS CSTSSPYPPL AILAEPSTSN NNNQLLPTPS SEPSPKKPPP KRTSTKDRHT KVDGRGRRIR
101: MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SSYFHNSNFS LQPRRSLFLE NTNTPPTTTT
201: LLHFQSNNNN AIFQPKHELR ESSSLDLSSE NNNEEGNFGR KRRPLEQDLS STIQHQVGNY LMQSNTSGTI PASHHAQIPA NIWMLANSNN HHLGGGVSGE
301: APPLWTFPGV SNSAALYRGT MSSGLHFMNF PTPMALLPGQ QLGSSGIGGN MNNNEGHLSM LSGLNPNYRT TVIGISESQA SESQSTHHGG SEDRHEHE
101: MPALCAARVF QLTRELGHKS DGETIEWLLQ QAEPSVIAAT GTGTIPANFT SLNISLRSSG SSMSVPSQLR SSYFHNSNFS LQPRRSLFLE NTNTPPTTTT
201: LLHFQSNNNN AIFQPKHELR ESSSLDLSSE NNNEEGNFGR KRRPLEQDLS STIQHQVGNY LMQSNTSGTI PASHHAQIPA NIWMLANSNN HHLGGGVSGE
301: APPLWTFPGV SNSAALYRGT MSSGLHFMNF PTPMALLPGQ QLGSSGIGGN MNNNEGHLSM LSGLNPNYRT TVIGISESQA SESQSTHHGG SEDRHEHE
001: MDPDPDHNHR PNFPLQLLDS STSSSSTSLA IISTTSEPNS EPKKPPPKRT STKDRHTKVE GRGRRIRMPA MCAARVFQLT RELGHKSDGE TIEWLLQQAE
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
101: PAVIAATGTG TIPANFTSLN ISLRSSRSSL SAAHLRTTPS SYYFHSPHQS MTHHLQHQHQ VRPKNESHSS SSSSSQLLDH NQMGNYLVQS TAGSLPTSQS
201: PATAPFWSSG DNTQNLWAFN INPHHSGVVA GDVYNPNSGG SGGGSGVHLM NFAAPIALFS GQPLASGYGG GGGGGGEHSH YGVLAALNAA YRPVAETGNH
301: NNNQQNRDGD HHHNHQEDGS TSHHS
Arabidopsis Description
TCP15TCP15 [Source:UniProtKB/TrEMBL;Acc:A0A178WLV7]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.