CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00520
KRH09568
KRH40636
KRH64858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	KRH00520	AT5G01970.1	21798944
AT2G30530.1	KRH09568	AT5G01970.1	21798944
AT2G30530.1	KRH40636	AT5G01970.1	21798944
AT2G30530.1	KRH64858	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30689	Soybean	nucleus	84.28	86.85
Solyc09g055590.2.1	Tomato	nucleus	25.97	60.0
CDY23991	Canola	plastid	40.55	55.45
Bra022806.1-P	Field mustard	plastid	41.46	54.17
VIT_06s0004g08310.t01	Wine grape	mitochondrion	51.71	54.05
CDX84826	Canola	plastid	40.77	52.96
AT2G30530.1	Thale cress	nucleus	44.42	52.56
CDY29667	Canola	cytosol	13.67	51.72
Zm00001d010455_P013	Maize	plastid	43.51	51.07
Bra021640.1-P	Field mustard	nucleus	24.15	50.96
GSMUA_Achr3P09690_001	Banana	mitochondrion	45.79	47.52
Os05t0315200-01	Rice	plasma membrane	44.65	46.78
OQU77734	Sorghum	nucleus, plastid	31.21	46.76
KRH40636	Soybean	nucleus	42.14	44.36
KRH64858	Soybean	nucleus	38.27	43.98
KRH09568	Soybean	nucleus	37.59	43.08
GSMUA_Achr8P21430_001	Banana	mitochondrion	44.65	42.98
KRH00520	Soybean	nucleus	41.0	42.45
TraesCS1D01G124900.2	Wheat	nucleus	41.46	42.03
TraesCS1A01G128300.1	Wheat	cytosol, plastid	41.23	41.8
TraesCS1B01G146700.2	Wheat	mitochondrion	42.37	40.52
KRG95525	Soybean	nucleus, plastid	18.91	24.41
KRH67202	Soybean	nucleus, plastid	18.22	24.32

Protein Annotations

EMBL:ACUP02010842	EnsemblPlants:KRG98088	EnsemblPlantsGene:GLYMA_18G050100	EntrezGene:100814303	ncoils:Coil	PANTHER:PTHR31016
PANTHER:PTHR31016:SF3	ProteinID:KRG98088	ProteinID:KRG98088.1	SEG:seg	UniParc:UPI000233DFF8	UniProt:I1MZN0
MapMan:20.2.4.4	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:4323734..4329696

Molecular Weight (calculated)

48399.2 Da

IEP (calculated)

6.813

GRAVY (calculated)

-0.822

Length

439 amino acids

Sequence
(BLAST)

001: MAYRRRQQQG FSKPSFSTFE EETTRNPNNP FPLPNDDVEG SASSSSSSSL AAKAIRASSA RRDSSLSSLY GLSSASSSPV SSSQPTPTPP PSSKDSRPYE
101: YTSMKNMNES KNGFWGVLAR KAKSIIEDDN VPQQSEMSGT GRSQFPGVAS RSKFQNSNHL EDSNLKRDGP SFIKGLDAIT SSLTHIGGTI GKSLEEGLTI
201: VENRTSDIIQ ETRKHIKKKP GNSVGQNQET NHSTTLHQSQ LRNQMSPKQT DQELQLKASR DVAMAMAAKA KLLLRELKTV KADLAFAKDR CAQLEEENKI
301: LRENRERGDS HDDDDLIRLQ LESLLAEKAR LAHENSVYAR ENRFLREVVE YHQLTMQDVV YLDESNEEVT EVNPLNLPPV PNMALDSITP SATSLLHSPE
401: PNLGMASELT RGTSSTISGK DAKSNEITIK DSRSSEATR

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.