CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	CDY11166	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022806.1-P	Field mustard	plastid	97.34	97.92
CDY23991	Canola	plastid	86.39	90.97
AT2G30530.1	Thale cress	nucleus	72.19	65.77
CDY29667	Canola	cytosol	21.3	62.07
Solyc09g055590.2.1	Tomato	nucleus	31.36	55.79
CDX98180	Canola	mitochondrion	26.33	49.17
VIT_06s0004g08310.t01	Wine grape	mitochondrion	55.92	45.0
Zm00001d010455_P013	Maize	plastid	49.11	44.38
KRH30689	Soybean	nucleus	53.85	42.72
KRG98088	Soybean	nucleus	52.96	40.77
Os05t0315200-01	Rice	plasma membrane	50.0	40.33
OQU77734	Sorghum	nucleus, plastid	34.91	40.27
TraesCS1D01G124900.2	Wheat	nucleus	49.41	38.57
GSMUA_Achr8P21430_001	Banana	mitochondrion	51.78	38.38
TraesCS1A01G128300.1	Wheat	cytosol, plastid	49.11	38.34
CDX90224	Canola	nucleus	39.94	38.24
GSMUA_Achr3P09690_001	Banana	mitochondrion	47.34	37.83
CDY63845	Canola	nucleus	39.05	37.71
CDX99879	Canola	mitochondrion	42.9	36.62
CDY26298	Canola	nucleus	43.2	36.59
TraesCS1B01G146700.2	Wheat	mitochondrion	49.41	36.38
CDY11166	Canola	cytosol	16.27	34.81
CDY11165	Canola	cytosol	1.48	26.32
CDX90923	Canola	nucleus, plastid	23.37	24.16
CDY17988	Canola	nucleus	23.67	23.74

Protein Annotations

EnsemblPlants:CDX84826	EnsemblPlantsGene:GSBRNA2T00142138001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3	ProteinID:CDX84826
ProteinID:CDX84826.1	SEG:seg	UniParc:UPI0004EEC624	MapMan:20.2.4.4	:	:

Description

BnaA03g14040D

Coordinates

chrLK031838:-:1443529..1445211

Molecular Weight (calculated)

37319.6 Da

IEP (calculated)

7.237

GRAVY (calculated)

-0.709

Length

338 amino acids

Sequence
(BLAST)

001: MERDKARMLS SSFPSSSSSS SSSSAASSLA AKAIRASSAH RDSSLSSAYS SPPVPTPPKE VVRKPYEYTS MKSLNEPKRS FWGSLASKAK ALLDDEDPPP
101: QTPTTTIDHH NTPSSTTASS GTKEAGRKTE NPSLQRSLDA ITSSFNYIGT AVEEGITAVE TRTAGIIQET RKKIKKKPNQ QKPPEIQADL EIQLKASRDV
201: AMAMAAKAKL LLRELKMVKS DLAFAKQRCA QLEEENKVLR EDHNGENSQT DNDDLVRLQL ETLLAEKARL AHENSIYTRE NLYLRGVVEY HQLTMQDVVY
301: FDEKTEEVTE VYPINVTSLS SSSNISNTHP NPQALEFK

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.