Factsheet for GSMUA_Achr8P21430_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P09690_001
GSMUA_Achr8P21430_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	GSMUA_Achr3P09690_001	AT5G01970.1	21798944
AT2G30530.1	GSMUA_Achr8P21430_001	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055670.1.1	Tomato	cytosol	9.43	69.35
GSMUA_Achr3P09690_001	Banana	mitochondrion	58.99	63.59
Zm00001d010455_P013	Maize	plastid	50.0	60.96
Solyc09g055590.2.1	Tomato	nucleus	24.12	57.89
Os05t0315200-01	Rice	plasma membrane	52.85	57.52
OQU77734	Sorghum	nucleus, plastid	36.18	56.31
CDY23991	Canola	plastid	37.94	53.89
PGSC0003DMT400096244	Potato	mitochondrion	27.41	52.52
TraesCS1D01G124900.2	Wheat	nucleus	49.56	52.19
Bra022806.1-P	Field mustard	plastid	38.38	52.08
CDX84826	Canola	plastid	38.38	51.78
VIT_06s0004g08310.t01	Wine grape	mitochondrion	47.59	51.67
CDX98180	Canola	mitochondrion	20.39	51.38
TraesCS1A01G128300.1	Wheat	cytosol, plastid	48.68	51.27
VIT_08s0056g00430.t01	Wine grape	nucleus	46.93	50.12
CDY29667	Canola	cytosol	12.72	50.0
TraesCS1B01G146700.2	Wheat	mitochondrion	49.34	49.02
AT2G30530.1	Thale cress	nucleus	39.47	48.52
GSMUA_Achr4P10350_001	Banana	nucleus	29.17	48.19
Bra005657.1-P	Field mustard	mitochondrion	16.45	47.77
KRH30689	Soybean	nucleus	44.52	47.65
PGSC0003DMT400071236	Potato	nucleus, plastid	34.21	47.27
GSMUA_Achr1P24410_001	Banana	nucleus	43.2	46.57
Solyc10g074800.1.1	Tomato	nucleus, plastid	33.11	46.32
AT5G01970.1	Thale cress	mitochondrion, nucleus	34.87	45.3
Bra021640.1-P	Field mustard	nucleus	20.61	45.19
KRG98088	Soybean	nucleus	42.98	44.65
CDY63845	Canola	nucleus	33.33	43.43
CDX90224	Canola	nucleus	32.89	42.49
AT1G30050.1	Thale cress	nucleus	35.96	42.16
Bra010801.1-P	Field mustard	nucleus	34.65	42.13
Bra032355.1-P	Field mustard	nucleus	35.75	41.06
CDX99879	Canola	mitochondrion	35.53	40.91
CDY26298	Canola	nucleus	35.75	40.85
CDY11166	Canola	cytosol	14.04	40.51
KRH40636	Soybean	nucleus	36.84	40.29
KRH64858	Soybean	nucleus	32.68	39.01
KRH09568	Soybean	nucleus	32.24	38.38
KRH00520	Soybean	nucleus	35.53	38.21
PGSC0003DMT400071259	Potato	extracellular, golgi	16.23	38.14
CDY11165	Canola	cytosol	1.32	31.58
GSMUA_Achr8P13100_001	Banana	nucleus	18.64	25.76

Protein Annotations

EnsemblPlants:GSMUA_Achr8P21430_001	EnsemblPlants:GSMUA_Achr8T21430_001	EnsemblPlantsGene:GSMUA_Achr8G21430_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3	SEG:seg	TMHMM:TMhelix	UniParc:UPI000295E9B5
UniProt:M0TSE6	MapMan:20.2.4.4	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G21430_001]

Coordinates

chr8:-:26311353..26317755

Molecular Weight (calculated)

50264.8 Da

IEP (calculated)

6.366

GRAVY (calculated)

-0.561

Length

456 amino acids

Sequence
(BLAST)

001: MAYRRKQPVA RVSTYDDSRS TSAGGEDASS TSSTPGSLAA RAIRASAAHR DVSSLSSAYG ESAVSSPRRE LHPLRSAPSP QQDSASYEYT SMKSLNESKY
101: GFWGTLARKA KTFIDNDETS NQFQGIDKNP HQTVDRSTGG QVRMKSWILY FIQTVVVLSS IFWKNMMDES FIWKTETTHK RSDAIGSSIN YISGTIKNAL
201: EEGLTIVESK TADIIHETRK LNIRRKGNAA NVQSQAAENL GQRYTSQIQT DYETQLKASR DVANAMAAKA KLLLRELKTV KADFAFAKER CAQLEEENKV
301: LRESHDKGDN PEDDDLIRLQ LETLLAEKAR LAHENSVYAR ENRFLREIVE YHQLTMQDVV YVDEGIEEVT EVYMTPNAPS TPSFAASEAN TVLVPTPLTP
401: THTTNSPTSV HPPSLSPPSI IIPEDCPIVP IPPMPTPLSD PLKSAPPPPS AAGAGY

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.