CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	CDY11166	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84826	Canola	plastid	90.97	86.39
AT2G30530.1	Thale cress	nucleus	76.64	66.31
CDY29667	Canola	cytosol	22.74	62.93
Solyc09g055590.2.1	Tomato	nucleus	33.33	56.32
CDX98180	Canola	mitochondrion	27.41	48.62
VIT_06s0004g08310.t01	Wine grape	mitochondrion	59.19	45.24
Zm00001d010455_P013	Maize	plastid	50.47	43.32
KRH30689	Soybean	nucleus	56.7	42.72
KRG98088	Soybean	nucleus	55.45	40.55
Os05t0315200-01	Rice	plasma membrane	52.65	40.33
OQU77734	Sorghum	nucleus, plastid	35.2	38.57
TraesCS1D01G124900.2	Wheat	nucleus	51.71	38.34
TraesCS1A01G128300.1	Wheat	cytosol, plastid	51.4	38.11
GSMUA_Achr8P21430_001	Banana	mitochondrion	53.89	37.94
CDY63845	Canola	nucleus	40.81	37.43
GSMUA_Achr3P09690_001	Banana	mitochondrion	48.91	37.12
CDX90224	Canola	nucleus	40.81	37.11
TraesCS1B01G146700.2	Wheat	mitochondrion	52.02	36.38
CDX99879	Canola	mitochondrion	44.55	36.11
CDY26298	Canola	nucleus	44.86	36.09
CDY11166	Canola	cytosol	16.82	34.18
CDY11165	Canola	cytosol	1.56	26.32
CDX90923	Canola	nucleus, plastid	25.23	24.77
CDY17988	Canola	nucleus	25.55	24.33

Protein Annotations

EnsemblPlants:CDY23991	EnsemblPlantsGene:GSBRNA2T00024507001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3	ProteinID:CDY23991
ProteinID:CDY23991.1	SEG:seg	UniParc:UPI0004EB2A6D	UniProt:A0A078GF25	MapMan:20.2.4.4	:

Description

BnaC03g17000DBnaC03g17000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GF25]

Coordinates

chrLK032152:-:361377..363112

Molecular Weight (calculated)

35399.4 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.649

Length

321 amino acids

Sequence
(BLAST)

001: MSSSSSFPSS SASSSSSAAS SLAAKAIRAS SAHRDSSLSS AYSSPPVPTP PKEVVRKPYE YTSMKSLNEP KRSFWGSLAS KAKALLDDED PPQSPTTRID
101: TPSGTKEAAR KTDNPSLQRS LDAITSSFNY IGTAVEEGIT AVETRTAGII QETRKKIKKK PNQQKPPEIQ ADLEIQLKAS RDVAMAMAAK AKLLLRELKM
201: VKSDLAFAKQ RCAQLEEENK VLREDHSGEN SQTDNDDLVR LQLETLLAEK ARLAHENSIY TRENLYLRGV VEYHQLTMQD VVYFDEKTEE VTEVYPINVT
301: SVSSSSDISN THPNPQVLEF K

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.