CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000862.1-P	Field mustard	nucleus, plastid	90.83	90.55
CDY17988	Canola	nucleus	79.2	76.85
AT4G02800.1	Thale cress	nucleus	65.44	64.26
VIT_07s0104g00500.t01	Wine grape	nucleus	52.6	50.44
KRH67202	Soybean	nucleus, plastid	48.62	48.33
KRG95525	Soybean	nucleus, plastid	48.01	46.18
Solyc06g008980.2.1	Tomato	nucleus	46.79	46.08
PGSC0003DMT400037917	Potato	nucleus	46.48	45.65
GSMUA_Achr8P13100_001	Banana	nucleus	41.28	40.91
EES11875	Sorghum	cytosol, nucleus, plastid	38.23	40.06
Os04t0228100-01	Rice	nucleus	38.84	39.94
Zm00001d004133_P001	Maize	cytosol	38.84	39.32
TraesCS2D01G065700.1	Wheat	cytosol, nucleus, plastid	33.64	34.27
TraesCS2A01G067400.1	Wheat	cytosol	33.64	34.16
TraesCS2B01G079600.1	Wheat	cytosol, nucleus, plastid	33.03	32.93
CDX98180	Canola	mitochondrion	17.74	32.04
CDY29667	Canola	cytosol	11.01	31.03
CDY23991	Canola	plastid	24.77	25.23
CDY11166	Canola	cytosol	11.93	24.68
CDX84826	Canola	plastid	24.16	23.37
CDX90224	Canola	nucleus	22.94	21.25
CDY63845	Canola	nucleus	22.63	21.14
CDY11165	Canola	cytosol	1.22	21.05
CDY26298	Canola	nucleus	24.16	19.8
CDX99879	Canola	mitochondrion	23.55	19.44

Protein Annotations

EnsemblPlants:CDX90923	EnsemblPlantsGene:GSBRNA2T00151659001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF2	ProteinID:CDX90923
ProteinID:CDX90923.1	SEG:seg	UniParc:UPI0004EF4619	MapMan:20.2.4.4	:	:

Description

BnaA03g26030D

Coordinates

chrLK031864:-:1322346..1323714

Molecular Weight (calculated)

37058.5 Da

IEP (calculated)

5.013

GRAVY (calculated)

-0.848

Length

327 amino acids

Sequence
(BLAST)

001: MAASVQTPSP IHTNKESGRS LIMVSESSPS SDKRLWSSLR NRIDVLLDEK SKDHKPISNS PLVAQKSVGE SERAKRLKSD SMLLLKGFDS VSHTLSQLSS
101: NLDNALQGVR ELAKPPTLSE ILHSNLKADQ IQQEQREEEE EESKGKKRKH ESDTEVKEDS SDEDEKRPKE RKIMKRAKNI AISMAAKANS LARELKSIKS
201: DLSFIQERCG LLEEENKRLR DGFVKSVGPE EDDLVRLQLE VLLTEKGRLA NENANLVREN QCLRQMVEYH QITSEDLSAS YEQVVQGLCL DFSSPFAEID
301: YEHEEKALDV SKSLIESFEK AEEEEQH

Best Arabidopsis Sequence Match ( AT4G02800.1 )
(BLAST)

001: MAASVETPSP NHTNNEGTRL NMVSATSFDS SSPSVSPSSD KRLWSNVRNR VDVLLEENSK NHKPVTNTIA IESERSKRFK NDSMLLLKGF DSVSHTLSLL
101: SSNLDNALQG VRELAKPPSY SEILHSNLKA DQIQRQQKEE DEEEEESKGK KRKHESDVEQ TEDSSNEEEK RPKERKIMKK AKNIAISMAA KANSLARELK
201: TIKSDLSFIQ ERCGLLEEEN KRLRDGFVKG VRPEEDDLVR LQLEVLLAEK ARLANENANL VRENQCLHQM VEYHQITSQD LSPSYEQVVQ GFCLDFSSPL
301: PQYDDEEEEH ETRARDVSKA LNESFEKAEE EQY

Arabidopsis Description

At4g02800 [Source:UniProtKB/TrEMBL;Acc:Q9SY05]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.