CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67202	Soybean	nucleus, plastid	81.18	83.89
VIT_07s0104g00500.t01	Wine grape	nucleus	56.47	56.3
PGSC0003DMT400037917	Potato	nucleus	52.06	53.15
Solyc06g008980.2.1	Tomato	nucleus	51.76	53.01
AT4G02800.1	Thale cress	nucleus	51.76	52.85
CDY17988	Canola	nucleus	49.71	50.15
Bra000862.1-P	Field mustard	nucleus, plastid	47.06	48.78
CDX90923	Canola	nucleus, plastid	46.18	48.01
Os04t0228100-01	Rice	nucleus	39.41	42.14
EES11875	Sorghum	cytosol, nucleus, plastid	38.53	41.99
Zm00001d004133_P001	Maize	cytosol	39.71	41.8
GSMUA_Achr8P13100_001	Banana	nucleus	39.41	40.61
TraesCS2A01G067400.1	Wheat	cytosol	36.76	38.82
TraesCS2D01G065700.1	Wheat	cytosol, nucleus, plastid	36.18	38.32
TraesCS2B01G079600.1	Wheat	cytosol, nucleus, plastid	36.76	38.11
KRH30689	Soybean	nucleus	24.41	19.48
KRH40636	Soybean	nucleus	23.82	19.42
KRH64858	Soybean	nucleus	21.47	19.11
KRH00520	Soybean	nucleus	23.82	19.1
KRG98088	Soybean	nucleus	24.41	18.91
KRH09568	Soybean	nucleus	20.88	18.54

Protein Annotations

EMBL:ACUP02012113	EnsemblPlants:KRG95525	EnsemblPlantsGene:GLYMA_19G156000	EntrezGene:100783134	ncoils:Coil	PANTHER:PTHR31016
PANTHER:PTHR31016:SF2	ProteinID:KRG95524.1	ProteinID:KRG95525	ProteinID:KRG95525.1	SEG:seg	UniParc:UPI000233ED24
UniProt:I1N9H4	MapMan:20.2.4.4	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:41656039..41658806

Molecular Weight (calculated)

38421.5 Da

IEP (calculated)

4.666

GRAVY (calculated)

-0.964

Length

340 amino acids

Sequence
(BLAST)

001: MTTSLETPPS PLDLHNNSQE GMRVMGYFSS PLFSPSSDKR FWSTLRSRID ALLDARQSET STHSPTNEQG NNRLKEDSML LMRGFDSVAH TLSLLSNNLD
101: NALHGARELA NPPTLTDIFH SKYDKVENKE DSGEKQKEEE ESKQGMKRKF DPNDVSEENA VDSQKEENGK KMMDTNIKKA KNLAVSMATK AASLARELKS
201: IKSDLCFMQE RCGLLEEENR RLRDGFAKGV RPEEDDLVRL QLEALLAEKS RLANENANLV RENQCLHQLV EYHQLASQDL SDESYEHALQ GMYLDFSSPP
301: PTIPEETRDG DGDEDENGEP THTRRNHICK FSASIDDGEE

Best Arabidopsis Sequence Match ( AT4G02800.1 )
(BLAST)

001: MAASVETPSP NHTNNEGTRL NMVSATSFDS SSPSVSPSSD KRLWSNVRNR VDVLLEENSK NHKPVTNTIA IESERSKRFK NDSMLLLKGF DSVSHTLSLL
101: SSNLDNALQG VRELAKPPSY SEILHSNLKA DQIQRQQKEE DEEEEESKGK KRKHESDVEQ TEDSSNEEEK RPKERKIMKK AKNIAISMAA KANSLARELK
201: TIKSDLSFIQ ERCGLLEEEN KRLRDGFVKG VRPEEDDLVR LQLEVLLAEK ARLANENANL VRENQCLHQM VEYHQITSQD LSPSYEQVVQ GFCLDFSSPL
301: PQYDDEEEEH ETRARDVSKA LNESFEKAEE EQY

Arabidopsis Description

At4g02800 [Source:UniProtKB/TrEMBL;Acc:Q9SY05]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.