Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G065700.1 | Wheat | cytosol, nucleus, plastid | 84.45 | 86.29 |
| TraesCS2A01G067400.1 | Wheat | cytosol | 83.84 | 85.4 |
| Os04t0228100-01 | Rice | nucleus | 63.41 | 65.41 |
| EES11875 | Sorghum | cytosol, nucleus, plastid | 57.93 | 60.9 |
| Zm00001d004133_P001 | Maize | cytosol | 55.49 | 56.35 |
| GSMUA_Achr8P13100_001 | Banana | nucleus | 40.85 | 40.61 |
| VIT_07s0104g00500.t01 | Wine grape | nucleus | 39.33 | 37.83 |
| Solyc06g008980.2.1 | Tomato | nucleus | 37.8 | 37.35 |
| PGSC0003DMT400037917 | Potato | nucleus | 37.8 | 37.24 |
| KRG95525 | Soybean | nucleus, plastid | 38.11 | 36.76 |
| KRH67202 | Soybean | nucleus, plastid | 36.28 | 36.17 |
| AT4G02800.1 | Thale cress | nucleus | 35.98 | 35.44 |
| CDY17988 | Canola | nucleus | 35.37 | 34.42 |
| Bra000862.1-P | Field mustard | nucleus, plastid | 34.15 | 34.15 |
| CDX90923 | Canola | nucleus, plastid | 32.93 | 33.03 |
| TraesCS4B01G122600.2 | Wheat | nucleus | 25.0 | 21.87 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 23.17 | 16.56 |
| TraesCS1B01G313300.1 | Wheat | nucleus | 23.78 | 13.45 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G079600.1 | EnsemblPlantsGene:TraesCS2B01G079600 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF2 | SEG:seg |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2B:+:44402995..44404423
Molecular Weight (calculated)
35227.1 Da
IEP (calculated)
4.369
GRAVY (calculated)
-0.430
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSSAASSLA VSPASDDRFW DGLRTRVDTI LEDRRLVASA ASTCAVASGR PKRLREDSLM LVRGLDSVAA SLAQLSDTLT AAQKGVNALA MCSSQARERE
101: RGEEEPDAKR HCRASTEFAA LVAQKEVAGE ALGNAAAAAD AKPREEPSGD VVLASAEVAQ STNLKRARSL AVSMAGRAAN LARELTTIKS ELRFMQERCG
201: LLEEENRRLR DGYDDGGAGA APEEDDLVRL QLEALLAEKS RLAQENANLA RENQSLVQLV EYHQLTAQEE EEEELEDHLL TASYEEAVMQ GMRLDFSSPL
301: GKLDGEGEFD GVPATPGSKL GVLVSPDE
101: RGEEEPDAKR HCRASTEFAA LVAQKEVAGE ALGNAAAAAD AKPREEPSGD VVLASAEVAQ STNLKRARSL AVSMAGRAAN LARELTTIKS ELRFMQERCG
201: LLEEENRRLR DGYDDGGAGA APEEDDLVRL QLEALLAEKS RLAQENANLA RENQSLVQLV EYHQLTAQEE EEEELEDHLL TASYEEAVMQ GMRLDFSSPL
301: GKLDGEGEFD GVPATPGSKL GVLVSPDE
001: MAASVETPSP NHTNNEGTRL NMVSATSFDS SSPSVSPSSD KRLWSNVRNR VDVLLEENSK NHKPVTNTIA IESERSKRFK NDSMLLLKGF DSVSHTLSLL
101: SSNLDNALQG VRELAKPPSY SEILHSNLKA DQIQRQQKEE DEEEEESKGK KRKHESDVEQ TEDSSNEEEK RPKERKIMKK AKNIAISMAA KANSLARELK
201: TIKSDLSFIQ ERCGLLEEEN KRLRDGFVKG VRPEEDDLVR LQLEVLLAEK ARLANENANL VRENQCLHQM VEYHQITSQD LSPSYEQVVQ GFCLDFSSPL
301: PQYDDEEEEH ETRARDVSKA LNESFEKAEE EQY
101: SSNLDNALQG VRELAKPPSY SEILHSNLKA DQIQRQQKEE DEEEEESKGK KRKHESDVEQ TEDSSNEEEK RPKERKIMKK AKNIAISMAA KANSLARELK
201: TIKSDLSFIQ ERCGLLEEEN KRLRDGFVKG VRPEEDDLVR LQLEVLLAEK ARLANENANL VRENQCLHQM VEYHQITSQD LSPSYEQVVQ GFCLDFSSPL
301: PQYDDEEEEH ETRARDVSKA LNESFEKAEE EQY
Arabidopsis Description
At4g02800 [Source:UniProtKB/TrEMBL;Acc:Q9SY05]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.