CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90923	Canola	nucleus, plastid	76.85	79.2
AT4G02800.1	Thale cress	nucleus	71.22	72.07
VIT_07s0104g00500.t01	Wine grape	nucleus	51.93	51.32
KRH67202	Soybean	nucleus, plastid	48.66	49.85
KRG95525	Soybean	nucleus, plastid	50.15	49.71
PGSC0003DMT400037917	Potato	nucleus	45.99	46.55
Solyc06g008980.2.1	Tomato	nucleus	45.1	45.78
GSMUA_Achr8P13100_001	Banana	nucleus	40.65	41.52
Os04t0228100-01	Rice	nucleus	39.17	41.51
EES11875	Sorghum	cytosol, nucleus, plastid	38.28	41.35
Zm00001d004133_P001	Maize	cytosol	37.69	39.32
TraesCS2A01G067400.1	Wheat	cytosol	35.31	36.96
TraesCS2B01G079600.1	Wheat	cytosol, nucleus, plastid	34.42	35.37
TraesCS2D01G065700.1	Wheat	cytosol, nucleus, plastid	33.53	35.2
CDX98180	Canola	mitochondrion	17.51	32.6
CDY29667	Canola	cytosol	10.09	29.31
CDY23991	Canola	plastid	24.33	25.55
CDY11166	Canola	cytosol	11.87	25.32
CDX84826	Canola	plastid	23.74	23.67
CDX90224	Canola	nucleus	23.15	22.1
CDY63845	Canola	nucleus	22.55	21.71
CDY11165	Canola	cytosol	1.19	21.05
CDY26298	Canola	nucleus	23.44	19.8
CDX99879	Canola	mitochondrion	22.85	19.44

Protein Annotations

EnsemblPlants:CDY17988	EnsemblPlantsGene:GSBRNA2T00002367001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF2	ProteinID:CDY17988
ProteinID:CDY17988.1	SEG:seg	UniParc:UPI0004EF0411	UniProt:A0A078G033	MapMan:20.2.4.4	:

Description

BnaC03g30600DBnaC03g30600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G033]

Coordinates

chrLK032080:-:364235..365754

Molecular Weight (calculated)

38172.6 Da

IEP (calculated)

4.785

GRAVY (calculated)

-0.847

Length

337 amino acids

Sequence
(BLAST)

001: MAASVQTPSP NHTNKESGSL IMVSETSLES PPQSLTPSSD KRLWSSLRNR IDVLLDEKSK DHKPITSSPL VAQKTVGESE RAKRLKSDSM LLLKGFDSVA
101: HTLSQLSSNL DNALQGVREL AKPPTLSEIF HSNLKADQIQ QQREEEEEEE SKGKKRKHDS DAEFKEDSSD EDEKRPKERK IMKRAKNIAI SMAAKANSLA
201: RELKSIKSDL SFIQERCGLL EEENKRLRDG FVKSVRPEED DLVRLQLEVL LTEKARLANE NANLVRENQC LRQMVEYHQI TSEDLSASYE QVVQGLCLDF
301: SSPFDEIDYG QEEEETTALD VSKSLIESFE KAEEEQH

Best Arabidopsis Sequence Match ( AT4G02800.1 )
(BLAST)

001: MAASVETPSP NHTNNEGTRL NMVSATSFDS SSPSVSPSSD KRLWSNVRNR VDVLLEENSK NHKPVTNTIA IESERSKRFK NDSMLLLKGF DSVSHTLSLL
101: SSNLDNALQG VRELAKPPSY SEILHSNLKA DQIQRQQKEE DEEEEESKGK KRKHESDVEQ TEDSSNEEEK RPKERKIMKK AKNIAISMAA KANSLARELK
201: TIKSDLSFIQ ERCGLLEEEN KRLRDGFVKG VRPEEDDLVR LQLEVLLAEK ARLANENANL VRENQCLHQM VEYHQITSQD LSPSYEQVVQ GFCLDFSSPL
301: PQYDDEEEEH ETRARDVSKA LNESFEKAEE EQY

Arabidopsis Description

At4g02800 [Source:UniProtKB/TrEMBL;Acc:Q9SY05]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.