CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY63845	Canola	nucleus	91.78	92.57
Bra010801.1-P	Field mustard	nucleus	91.5	86.13
Solyc09g055670.1.1	Tomato	cytosol	12.46	70.97
CDX98180	Canola	mitochondrion	33.71	65.75
CDY26298	Canola	nucleus	73.37	64.91
AT1G30050.1	Thale cress	nucleus	71.39	64.78
CDX99879	Canola	mitochondrion	71.1	63.38
PGSC0003DMT400096244	Potato	mitochondrion	34.56	51.26
CDY29667	Canola	cytosol	16.43	50.0
PGSC0003DMT400071236	Potato	nucleus, plastid	43.34	46.36
Solyc10g074800.1.1	Tomato	nucleus, plastid	42.78	46.32
CDY23991	Canola	plastid	37.11	40.81
VIT_08s0056g00430.t01	Wine grape	nucleus	49.29	40.75
CDX84826	Canola	plastid	38.24	39.94
Zm00001d010455_P013	Maize	plastid	42.21	39.84
KRH40636	Soybean	nucleus	47.03	39.81
PGSC0003DMT400071259	Potato	extracellular, golgi	21.25	38.66
KRH00520	Soybean	nucleus	46.18	38.44
KRH64858	Soybean	nucleus	41.08	37.96
Os05t0315200-01	Rice	plasma membrane	45.04	37.95
KRH09568	Soybean	nucleus	40.51	37.34
GSMUA_Achr3P09690_001	Banana	mitochondrion	43.91	36.64
CDY11166	Canola	cytosol	16.15	36.08
TraesCS1D01G124900.2	Wheat	nucleus	42.49	34.64
TraesCS1A01G128300.1	Wheat	cytosol, plastid	41.93	34.18
GSMUA_Achr8P21430_001	Banana	mitochondrion	42.49	32.89
TraesCS1B01G146700.2	Wheat	mitochondrion	41.93	32.24
OQU77734	Sorghum	nucleus, plastid	26.35	31.74
CDY11165	Canola	cytosol	1.42	26.32
CDY17988	Canola	nucleus	22.1	23.15
CDX90923	Canola	nucleus, plastid	21.25	22.94

Protein Annotations

EnsemblPlants:CDX90224	EnsemblPlantsGene:GSBRNA2T00150786001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CDX90224
ProteinID:CDX90224.1	SEG:seg	UniParc:UPI0004EEACF2	MapMan:20.2.4.4	:	:

Description

BnaA08g17600D

Coordinates

chrLK031862:+:735123..736256

Molecular Weight (calculated)

39600.0 Da

IEP (calculated)

6.301

GRAVY (calculated)

-0.869

Length

353 amino acids

Sequence
(BLAST)

001: MAYRRRQGIT RASTFNDDIY NQTPDHDHGD LKAIRASNSH DDATTRNESR GFWGILAQKA KSILEEDEEE EHHQQHQHQQ QQRNVVVSEP SNNNSNNNPT
101: IRKSIEKITT TMNHIGDSFE KGRTIVESQI RKKGSDLMEN GPWQPLTQPS PHESQLKASR DVAMATAAKA KLLLRELKTV KADLAFAKQR CSQLEEENKR
201: LRDNREKGNT NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV AEVNPSITRT LSMASFSGAS ELPVSPSPSS
301: PGSPSRLSVS TDVYPVLVQQ SSASDVVESP KPVRPPSLGY ADDGKRPSSQ LSV

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.