Factsheet for VIT_08s0056g00430.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0039g01880.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	VIT_16s0039g01880.t01	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g055670.1.1	Tomato	cytosol	9.84	67.74
PGSC0003DMT400096244	Potato	mitochondrion	34.19	61.34
CDX98180	Canola	mitochondrion	24.59	58.01
Solyc10g074800.1.1	Tomato	nucleus, plastid	42.39	55.52
PGSC0003DMT400071236	Potato	nucleus, plastid	42.86	55.45
VIT_06s0004g08310.t01	Wine grape	mitochondrion	53.86	54.76
AT5G01970.1	Thale cress	mitochondrion, nucleus	44.26	53.85
Zm00001d010455_P013	Maize	plastid	46.6	53.21
Bra005657.1-P	Field mustard	mitochondrion	18.74	50.96
Os05t0315200-01	Rice	plasma membrane	49.88	50.84
AT1G30050.1	Thale cress	nucleus	45.9	50.39
KRH40636	Soybean	nucleus	49.18	50.36
CDY63845	Canola	nucleus	40.75	49.71
Bra010801.1-P	Field mustard	nucleus	43.56	49.6
OQU77734	Sorghum	nucleus, plastid	33.96	49.49
CDX90224	Canola	nucleus	40.75	49.29
CDX99879	Canola	mitochondrion	44.96	48.48
CDY26298	Canola	nucleus	45.2	48.37
Bra032355.1-P	Field mustard	nucleus	44.96	48.36
GSMUA_Achr3P09690_001	Banana	mitochondrion	47.54	47.99
KRH00520	Soybean	nucleus	46.84	47.17
GSMUA_Achr8P21430_001	Banana	mitochondrion	50.12	46.93
KRH09568	Soybean	nucleus	41.45	46.21
KRH64858	Soybean	nucleus	40.52	45.29
TraesCS1A01G128300.1	Wheat	cytosol, plastid	45.9	45.27
TraesCS1D01G124900.2	Wheat	nucleus	45.9	45.27
TraesCS1B01G146700.2	Wheat	mitochondrion	46.37	43.14
CDY11166	Canola	cytosol	15.46	41.77
PGSC0003DMT400071259	Potato	extracellular, golgi	18.5	40.72
CDY11165	Canola	cytosol	1.41	31.58
VIT_07s0104g00500.t01	Wine grape	nucleus	23.18	29.03

Protein Annotations

ArrayExpress:VIT_08s0056g00430	EMBL:FN595995	EnsemblPlants:VIT_08s0056g00430.t01	EnsemblPlantsGene:VIT_08s0056g00430	EntrezGene:100255300	EntrezGene:LOC100255300
ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CCB55953	ProteinID:CCB55953.1	RefSeq:XP_002265705
RefSeq:XP_002265705.1	SEG:seg	UniParc:UPI0001983A5C	UniProt:F6HMS8	wikigene:100255300	wikigene:LOC100255300
MapMan:20.2.4.4	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:664973..668842

Molecular Weight (calculated)

47025.3 Da

IEP (calculated)

5.761

GRAVY (calculated)

-0.830

Length

427 amino acids

Sequence
(BLAST)

001: MAYRRRQGIT RASTFKEEVR HDGDDLSSSS SFFSSSSSFS GSSSLASQAI RASAAHRDSS LSSAYGDSAF STANPSKSKG PGRYEYTSMN ISNESKYGFW
101: GVLARKAKAI LEEDNGFQNL ETQGRMRTQT PDTSTGSQNH QPYQSSENNR KIENPRLRKG LDAITSSLNH IGDTLGNAFE EGRNIVENKT ADIIQETRRL
201: QIRRKGNSEE ANQASGLQGQ WQPPAQLQLR PNQENQIKAS RDVAMATAAK AKLLLRELKT VKADLAFAKE RCAQLEEENK ILRESREKGD NPADDDLIRL
301: QLETLLAEKA RLAHENSVYA RENRFLREIV EYHQLTMQDV VYLDEGVEEV TEVYPISKML SISPPSPTSP PSPLDMDPPL SPPVTNEASP PHTPSEETAT
401: TAGSQAPSNS TLPSSSAEDS TRQLTSA

Best Arabidopsis Sequence Match ( AT5G01970.1 )
(BLAST)

001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S

Arabidopsis Description

Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.