Factsheet for PGSC0003DMT400071236

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400038352

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	PGSC0003DMT400038352	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074800.1.1	Tomato	nucleus, plastid	94.24	95.4
CDX98180	Canola	mitochondrion	33.03	60.22
PGSC0003DMT400071259	Potato	extracellular, golgi	30.61	52.06
Bra005657.1-P	Field mustard	mitochondrion	22.73	47.77
PGSC0003DMT400096244	Potato	mitochondrion	34.24	47.48
Bra010801.1-P	Field mustard	nucleus	50.0	44.0
CDY63845	Canola	nucleus	46.36	43.71
CDX90224	Canola	nucleus	46.36	43.34
VIT_08s0056g00430.t01	Wine grape	nucleus	55.45	42.86
AT1G30050.1	Thale cress	nucleus	50.3	42.67
CDX99879	Canola	mitochondrion	50.3	41.92
Zm00001d010455_P013	Maize	plastid	47.27	41.71
AT5G01970.1	Thale cress	mitochondrion, nucleus	44.24	41.6
KRH64858	Soybean	nucleus	47.88	41.36
Bra032355.1-P	Field mustard	nucleus	49.7	41.31
CDY26298	Canola	nucleus	49.7	41.1
KRH09568	Soybean	nucleus	47.58	40.99
KRH40636	Soybean	nucleus	49.09	38.85
Os05t0315200-01	Rice	plasma membrane	48.48	38.19
KRH00520	Soybean	nucleus	48.79	37.97
CDY11166	Canola	cytosol	17.88	37.34
GSMUA_Achr3P09690_001	Banana	mitochondrion	45.45	35.46
TraesCS1D01G124900.2	Wheat	nucleus	45.15	34.41
GSMUA_Achr8P21430_001	Banana	mitochondrion	47.27	34.21
TraesCS1A01G128300.1	Wheat	cytosol, plastid	44.85	34.18
OQU77734	Sorghum	nucleus, plastid	29.39	33.11
TraesCS1B01G146700.2	Wheat	mitochondrion	45.15	32.46
CDY11165	Canola	cytosol	1.52	26.32
PGSC0003DMT400037917	Potato	nucleus	20.3	20.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400071236	EnsemblPlantsGene:PGSC0003DMG400027697	EntrezGene:102596288	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6
PGSC:PGSC0003DMG400027697	RefSeq:XP_006362354.1	SEG:seg	UniParc:UPI000295C1A8	UniProt:M1CNE3	MapMan:20.2.4.4

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027697]

Coordinates

chr10:+:48598217..48602547

Molecular Weight (calculated)

36639.6 Da

IEP (calculated)

7.467

GRAVY (calculated)

-0.795

Length

330 amino acids

Sequence
(BLAST)

001: MAYRRKQGIS RSSTFQEESI FRSPGEPKQG ISRSSTFHHE TTTFRPPGDP FSSSSSSSSS SSSSSLAAQA IRASAAHHRR ASQDALSNGY SENEAHGFWG
101: VLARKGKDIL EESQEGRTIV ETSQDHISNG RNPWQMQTTR PQTQTIHEDQ LKASRDVAMA TAAKAKLLLR ELKTVKADLA FAKQRSSQLE EENKMLREAR
201: EKGDNPADDD MIRLQLETLL AEKARLAHEN SVYARENLIL REIVEYHQLT MQDVVYLDEG FEEVTEVSPI PAVSRMLSAS PPLSPKSIHH SSPSRNSSFT
301: NLTALGSQQV NTNEELPTST SSKGKDLTRK

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.