Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d010455_P013 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G30530.1 | Zm00001d010455_P013 | AT5G01970.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU77734 | Sorghum | nucleus, plastid | 71.39 | 91.13 |
| Solyc09g055670.1.1 | Tomato | cytosol | 12.03 | 72.58 |
| Os05t0315200-01 | Rice | plasma membrane | 76.2 | 68.02 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 71.12 | 61.43 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 69.52 | 60.05 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 71.12 | 57.95 |
| Solyc09g055590.2.1 | Tomato | nucleus | 29.41 | 57.89 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 35.29 | 55.46 |
| CDX98180 | Canola | mitochondrion | 25.94 | 53.59 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 58.82 | 52.01 |
| Bra005657.1-P | Field mustard | mitochondrion | 21.39 | 50.96 |
| CDY23991 | Canola | plastid | 43.32 | 50.47 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 60.96 | 50.0 |
| CDX84826 | Canola | plastid | 44.38 | 49.11 |
| Bra022806.1-P | Field mustard | plastid | 44.12 | 49.11 |
| VIT_06s0004g08310.t01 | Wine grape | mitochondrion | 54.55 | 48.57 |
| AT2G30530.1 | Thale cress | nucleus | 47.86 | 48.25 |
| AT5G01970.1 | Thale cress | mitochondrion, nucleus | 45.19 | 48.15 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 41.71 | 47.27 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 40.64 | 46.63 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 53.21 | 46.6 |
| CDY29667 | Canola | cytosol | 14.44 | 46.55 |
| KRH30689 | Soybean | nucleus | 52.14 | 45.77 |
| Bra021640.1-P | Field mustard | nucleus | 25.13 | 45.19 |
| KRG98088 | Soybean | nucleus | 51.07 | 43.51 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 22.19 | 42.78 |
| CDY63845 | Canola | nucleus | 39.84 | 42.57 |
| CDX90224 | Canola | nucleus | 39.84 | 42.21 |
| Bra010801.1-P | Field mustard | nucleus | 41.71 | 41.6 |
| AT1G30050.1 | Thale cress | nucleus | 42.78 | 41.13 |
| Bra032355.1-P | Field mustard | nucleus | 43.32 | 40.81 |
| CDY26298 | Canola | nucleus | 43.32 | 40.6 |
| KRH40636 | Soybean | nucleus | 45.19 | 40.53 |
| CDY11166 | Canola | cytosol | 17.11 | 40.51 |
| CDX99879 | Canola | mitochondrion | 42.25 | 39.9 |
| Zm00001d044674_P003 | Maize | mitochondrion, nucleus | 39.84 | 39.42 |
| KRH00520 | Soybean | nucleus | 44.12 | 38.92 |
| KRH64858 | Soybean | nucleus | 39.57 | 38.74 |
| KRH09568 | Soybean | nucleus | 37.97 | 37.08 |
| CDY11165 | Canola | cytosol | 1.87 | 36.84 |
| Zm00001d010623_P001 | Maize | plastid | 37.43 | 28.4 |
| Zm00001d038509_P001 | Maize | mitochondrion | 37.17 | 26.13 |
| Zm00001d004133_P001 | Maize | cytosol | 20.59 | 23.84 |
Protein Annotations
| EMBL:BT065450 | EMBL:EU964912 | EnsemblPlants:Zm00001d010455_P013 | EnsemblPlants:Zm00001d010455_T013 | EnsemblPlantsGene:Zm00001d010455 | EntrezGene:100276815 |
| EntrezGene:100284568 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 | ProteinID:AQK94084.1 | SEG:seg |
| UniParc:UPI000182E18C | UniProt:B6TIU7 | MapMan:20.2.4.4 | : | : | : |
Description
No Description!
Coordinates
chr8:+:115972344..115979363
Molecular Weight (calculated)
41421.4 Da
IEP (calculated)
7.469
GRAVY (calculated)
-0.780
Length
374 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRKPQPH PQPQPTPSLE HHYPSSVGPA SPDSLAAQAM RASAAHRDAS SLTSAYSASA SLAASRRSHH EPSVSTPSLD SSGYEYTSMK NLNEAKYGFW
101: GTLARKAKSF LDEDCSPEQY KSPRDDVHVG VQLPHSKQLP GETWKPETPP SQKRSESITS SLTYIGGTIK NALEEGRTIV ENKTADIIQE TRKLNIRRKG
201: AGLNTQGEAG HKIAQRHLPQ NPLDHETQLK ASRDVANAMA AKAKLLLREL KTVKADLAFA KERCAQLEEE NKMLRESYDK GDNPEDDDLI RLQLETLLAE
301: KARLAHENSV YARENRFLRE IVEYHQLTMQ DVIYVDEGIE EVTEVYPTQV LPRTGSSVSR AATAATPKSA PTST
101: GTLARKAKSF LDEDCSPEQY KSPRDDVHVG VQLPHSKQLP GETWKPETPP SQKRSESITS SLTYIGGTIK NALEEGRTIV ENKTADIIQE TRKLNIRRKG
201: AGLNTQGEAG HKIAQRHLPQ NPLDHETQLK ASRDVANAMA AKAKLLLREL KTVKADLAFA KERCAQLEEE NKMLRESYDK GDNPEDDDLI RLQLETLLAE
301: KARLAHENSV YARENRFLRE IVEYHQLTMQ DVIYVDEGIE EVTEVYPTQV LPRTGSSVSR AATAATPKSA PTST
001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
Arabidopsis Description
Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.