Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90224 | Canola | nucleus | 86.13 | 91.5 |
| CDY63845 | Canola | nucleus | 84.27 | 90.29 |
| Bra032355.1-P | Field mustard | nucleus | 78.13 | 73.8 |
| AT1G30050.1 | Thale cress | nucleus | 74.93 | 72.24 |
| Solyc09g055670.1.1 | Tomato | cytosol | 11.73 | 70.97 |
| PGSC0003DMT400096244 | Potato | mitochondrion | 32.8 | 51.68 |
| Solyc10g074800.1.1 | Tomato | nucleus, plastid | 43.47 | 50.0 |
| PGSC0003DMT400071236 | Potato | nucleus, plastid | 44.0 | 50.0 |
| Bra005657.1-P | Field mustard | mitochondrion | 20.27 | 48.41 |
| VIT_08s0056g00430.t01 | Wine grape | nucleus | 49.6 | 43.56 |
| KRH40636 | Soybean | nucleus | 46.4 | 41.73 |
| Zm00001d010455_P013 | Maize | plastid | 41.6 | 41.71 |
| Bra022806.1-P | Field mustard | plastid | 37.33 | 41.67 |
| KRH64858 | Soybean | nucleus | 42.13 | 41.36 |
| KRH00520 | Soybean | nucleus | 46.13 | 40.8 |
| Bra021640.1-P | Field mustard | nucleus | 22.4 | 40.38 |
| PGSC0003DMT400071259 | Potato | extracellular, golgi | 20.53 | 39.69 |
| KRH09568 | Soybean | nucleus | 40.27 | 39.43 |
| Os05t0315200-01 | Rice | plasma membrane | 43.2 | 38.66 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 41.07 | 36.41 |
| TraesCS1D01G124900.2 | Wheat | nucleus | 41.87 | 36.26 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 41.07 | 35.57 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 42.13 | 34.65 |
| OQU77734 | Sorghum | nucleus, plastid | 26.4 | 33.79 |
| TraesCS1B01G146700.2 | Wheat | mitochondrion | 41.33 | 33.77 |
| Bra000862.1-P | Field mustard | nucleus, plastid | 20.0 | 22.87 |
Protein Annotations
Description
AT1G30050 (E=6e-121) | unknown protein
Coordinates
chrA08:-:16511409..16512536
Molecular Weight (calculated)
41672.2 Da
IEP (calculated)
6.261
GRAVY (calculated)
-0.850
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRRQGIT RASTFNDDIY NQTPDHDNGD LKGHSNGGSS FRSSQSFSSH SSLAAQAIRA SSNSHDDATT RNESRGFWGI LAQKAKSILE EDEEEEQQQH
101: QQQQRNVVVS EPSNNNNNNN PTIRKSIEKI TTTMNHIGDS FEKGRTIVES QIRKKGSDLM ENGPWQPLTQ PSPHESQLKA SRDVAMATAA KAKLLLRELK
201: TVKADLAFAK QRCSQLEEEN KRLRDNREKG NTNPADDDLI RLQLETLLAE KARLAHENSI YARENRFLRE IVEYHQLTMQ DVVYIDEGIE EVAEVNPSIT
301: RTLSMASFSG ASELPVSPSP SSPGSPSRLS VSTDVYPVLV QQSSASDVVE SPKPVRPPSL GYADDGKRPS SQLSV
101: QQQQRNVVVS EPSNNNNNNN PTIRKSIEKI TTTMNHIGDS FEKGRTIVES QIRKKGSDLM ENGPWQPLTQ PSPHESQLKA SRDVAMATAA KAKLLLRELK
201: TVKADLAFAK QRCSQLEEEN KRLRDNREKG NTNPADDDLI RLQLETLLAE KARLAHENSI YARENRFLRE IVEYHQLTMQ DVVYIDEGIE EVAEVNPSIT
301: RTLSMASFSG ASELPVSPSP SSPGSPSRLS VSTDVYPVLV QQSSASDVVE SPKPVRPPSL GYADDGKRPS SQLSV
001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
Arabidopsis Description
Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.