CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90224	Canola	nucleus	92.57	91.78
Bra010801.1-P	Field mustard	nucleus	90.29	84.27
Solyc09g055670.1.1	Tomato	cytosol	12.57	70.97
CDY26298	Canola	nucleus	74.86	65.66
AT1G30050.1	Thale cress	nucleus	72.86	65.55
CDX98180	Canola	mitochondrion	33.71	65.19
CDX99879	Canola	mitochondrion	70.86	62.63
PGSC0003DMT400096244	Potato	mitochondrion	34.86	51.26
CDY29667	Canola	cytosol	16.57	50.0
PGSC0003DMT400071236	Potato	nucleus, plastid	43.71	46.36
Solyc10g074800.1.1	Tomato	nucleus, plastid	43.14	46.32
CDY23991	Canola	plastid	37.43	40.81
VIT_08s0056g00430.t01	Wine grape	nucleus	49.71	40.75
KRH40636	Soybean	nucleus	48.0	40.29
Zm00001d010455_P013	Maize	plastid	42.57	39.84
CDX84826	Canola	plastid	37.71	39.05
KRH64858	Soybean	nucleus	42.57	39.01
KRH00520	Soybean	nucleus	46.86	38.68
PGSC0003DMT400071259	Potato	extracellular, golgi	21.14	38.14
KRH09568	Soybean	nucleus	41.14	37.6
CDY11166	Canola	cytosol	16.86	37.34
Os05t0315200-01	Rice	plasma membrane	44.57	37.23
GSMUA_Achr3P09690_001	Banana	mitochondrion	43.43	35.93
TraesCS1D01G124900.2	Wheat	nucleus	41.71	33.72
GSMUA_Achr8P21430_001	Banana	mitochondrion	43.43	33.33
TraesCS1A01G128300.1	Wheat	cytosol, plastid	41.14	33.26
OQU77734	Sorghum	nucleus, plastid	26.86	32.08
TraesCS1B01G146700.2	Wheat	mitochondrion	41.71	31.81
CDY11165	Canola	cytosol	1.43	26.32
CDX90923	Canola	nucleus, plastid	21.14	22.63
CDY17988	Canola	nucleus	21.71	22.55

Protein Annotations

EnsemblPlants:CDY63845	EnsemblPlantsGene:GSBRNA2T00039675001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CDY63845
ProteinID:CDY63845.1	SEG:seg	UniParc:UPI0004EE956F	UniProt:A0A078J9E9	MapMan:20.2.4.4	:

Description

BnaCnng42740DBnaCnng42740D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9E9]

Coordinates

chrLK034358:-:28384..29508

Molecular Weight (calculated)

39224.6 Da

IEP (calculated)

6.075

GRAVY (calculated)

-0.856

Length

350 amino acids

Sequence
(BLAST)

001: MAYRRRQGIT RASTFNDDIY NQTPDHDHGD LKAIRASNSH DDATTRNESR GFWGILAQKA KSILEEDEEE EHQQHQQQQR NVVVSEPSNN NNNNNPTIRK
101: SIEKITTTMN HIGDSFEKGR TIVESQIRKK GSDLMENGPW QPLTQPSPHE SQLKASRDVA MATAAKAKLL LRELKTVKAD LAFAKQRCSQ LEEENKRLRD
201: NREKGNTNPA DDDLIRLQLE TLLAEKARLA HENSIYAREN RFLREIVEYH QLTMQDVVYI DEGIEEVAEV NPSITRTLSM ASFSGASELP VSPSPSSPGS
301: PSRLSVSTDV YPVLVQQSSA SDVVESPKPV RPPSLGYADD GKRPSSQLSV

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.