CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
endoplasmic reticulum 1
plasma membrane 1
vacuole 1
golgi 1
extracellular 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11166

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	CDY11166	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021640.1-P	Field mustard	nucleus	65.52	36.54
CDX98180	Canola	mitochondrion	42.24	27.07
Solyc09g055590.2.1	Tomato	nucleus	43.1	26.32
CDY11165	Canola	cytosol	4.31	26.32
CDY23991	Canola	plastid	62.93	22.74
CDX84826	Canola	plastid	62.07	21.3
AT2G30530.1	Thale cress	nucleus	62.93	19.68
CDY63845	Canola	nucleus	50.0	16.57
CDX90224	Canola	nucleus	50.0	16.43
CDY26298	Canola	nucleus	50.86	14.79
Zm00001d010455_P013	Maize	plastid	46.55	14.44
CDX99879	Canola	mitochondrion	49.14	14.39
KRH30689	Soybean	nucleus	50.86	13.85
Os05t0315200-01	Rice	plasma membrane	50.0	13.84
GSMUA_Achr3P09690_001	Banana	mitochondrion	50.0	13.71
KRG98088	Soybean	nucleus	51.72	13.67
TraesCS1A01G128300.1	Wheat	cytosol, plastid	48.28	12.93
TraesCS1D01G124900.2	Wheat	nucleus	48.28	12.93
VIT_06s0004g08310.t01	Wine grape	mitochondrion	46.55	12.86
GSMUA_Achr8P21430_001	Banana	mitochondrion	50.0	12.72
TraesCS1B01G146700.2	Wheat	mitochondrion	49.14	12.42
CDX90923	Canola	nucleus, plastid	31.03	11.01
CDY17988	Canola	nucleus	29.31	10.09
CDY11166	Canola	cytosol	12.07	8.86
OQU77734	Sorghum	nucleus, plastid	6.9	2.73

Protein Annotations

EnsemblPlants:CDY29667	EnsemblPlantsGene:GSBRNA2T00043431001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF3	ProteinID:CDY29667
ProteinID:CDY29667.1	SEG:seg	UniParc:UPI0004EEC9C8	UniProt:A0A078GWV3	MapMan:20.2.4.4	:

Description

BnaA04g17600DBnaA04g17600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GWV3]

Coordinates

chrLK032241:-:201554..202382

Molecular Weight (calculated)

13150.4 Da

IEP (calculated)

4.301

GRAVY (calculated)

-0.343

Length

116 amino acids

Sequence
(BLAST)

001: MCNNISGTLT LPSSDCLCVC EFLVHNGDNT QTDNDDLVRL QLETLLAEKA RLAHENSIYK RENLYLRGVV EYHQLTMQDV VYFDERTEQV TEVYPVNVTS
101: VSSSSSSSNP QVLEFK

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.