CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY58544

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G01970.1	CDY58544	AT3G03000.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005657.1-P	Field mustard	mitochondrion	63.29	63.69
CDX98180	Canola	mitochondrion	31.01	27.07
PGSC0003DMT400096244	Potato	mitochondrion	35.44	23.53
PGSC0003DMT400071259	Potato	extracellular, golgi	27.22	22.16
AT5G01970.1	Thale cress	mitochondrion, nucleus	43.04	19.37
Solyc09g055670.1.1	Tomato	cytosol	7.59	19.35
Solyc10g074800.1.1	Tomato	nucleus, plastid	37.34	18.1
PGSC0003DMT400071236	Potato	nucleus, plastid	37.34	17.88
Zm00001d010455_P013	Maize	plastid	40.51	17.11
OQU77734	Sorghum	nucleus, plastid	31.65	17.06
CDY63845	Canola	nucleus	37.34	16.86
CDY23991	Canola	plastid	34.18	16.82
CDX84826	Canola	plastid	34.81	16.27
CDX90224	Canola	nucleus	36.08	16.15
CDY11165	Canola	cytosol	1.9	15.79
KRH09568	Soybean	nucleus	37.97	15.67
VIT_08s0056g00430.t01	Wine grape	nucleus	41.77	15.46
KRH40636	Soybean	nucleus	40.51	15.35
CDY26298	Canola	nucleus	38.61	15.29
Os05t0315200-01	Rice	plasma membrane	40.51	15.27
KRH64858	Soybean	nucleus	36.71	15.18
CDX99879	Canola	mitochondrion	37.97	15.15
KRH00520	Soybean	nucleus	39.24	14.62
TraesCS1D01G124900.2	Wheat	nucleus	38.61	14.09
GSMUA_Achr8P21430_001	Banana	mitochondrion	40.51	14.04
TraesCS1A01G128300.1	Wheat	cytosol, plastid	37.97	13.86
GSMUA_Achr3P09690_001	Banana	mitochondrion	36.71	13.71
TraesCS1B01G146700.2	Wheat	mitochondrion	38.61	13.29
CDY29667	Canola	cytosol	8.86	12.07
CDX90923	Canola	nucleus, plastid	24.68	11.93
CDY17988	Canola	nucleus	25.32	11.87

Protein Annotations

EnsemblPlants:CDY11166	EnsemblPlantsGene:GSBRNA2T00049178001	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:CDY11166
ProteinID:CDY11166.1	SEG:seg	UniParc:UPI0004EEE16A	UniProt:A0A078FCV0	MapMan:20.2.4.4	:

Description

BnaA03g00020DBnaA03g00020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCV0]

Coordinates

chrLK032010:-:2605..3803

Molecular Weight (calculated)

18146.9 Da

IEP (calculated)

10.253

GRAVY (calculated)

-0.545

Length

158 amino acids

Sequence
(BLAST)

001: MMRTMDRECC VNSQGESKCP SFFSFLTHVY LYICNTYLNL NYGWRIERRR HGIGKFATLK DDTDRLPPSR KASLPAALAF PDFDHPRSKV ARATAAKAKL
101: LLRELKTVKA DIAFVKERRA QLEEENIHLR ENHHGKGSNP AIRLQLESLL AEKARFSS

Best Arabidopsis Sequence Match ( AT5G01970.2 )
(BLAST)

001: MDNPKLRRGL DKLTSSLNQI GDTFEKAFED GRTLVENKTA DIIQETRKLQ TRRRGTGGED ENQNQSYGVS SSWKKSPEQP MQLNHIEHET QLKASRDVAM
101: ATAAKAKLLL RELKTVKADL AFAKERCAQL EEENKHLRES HREKGSNPAD EDLIRLQLES LLAEKARLAH ENSVYARENR FLREIVEYHQ LTMQDVVYID
201: EGSEEVTQVS PFVSTLMTSS PADRSQSPPS QEMIKEMLVV AEESSVCASV VSVS

Arabidopsis Description

Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.