Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 3
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr3P09690_001 | |
GSMUA_Achr8P21430_001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G30530.1 | GSMUA_Achr3P09690_001 | AT5G01970.1 | 21798944 |
AT2G30530.1 | GSMUA_Achr8P21430_001 | AT5G01970.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
Solyc09g055670.1.1 | Tomato | cytosol | 9.93 | 67.74 |
GSMUA_Achr8P21430_001 | Banana | mitochondrion | 63.59 | 58.99 |
Zm00001d010455_P013 | Maize | plastid | 52.01 | 58.82 |
Solyc09g055590.2.1 | Tomato | nucleus | 25.06 | 55.79 |
Os05t0315200-01 | Rice | plasma membrane | 54.85 | 55.37 |
OQU77734 | Sorghum | nucleus, plastid | 37.83 | 54.61 |
CDX98180 | Canola | mitochondrion | 23.17 | 54.14 |
PGSC0003DMT400096244 | Potato | mitochondrion | 30.02 | 53.36 |
TraesCS1D01G124900.2 | Wheat | nucleus | 52.25 | 51.04 |
TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 51.3 | 50.12 |
CDY29667 | Canola | cytosol | 13.71 | 50.0 |
CDY23991 | Canola | plastid | 37.12 | 48.91 |
VIT_06s0004g08310.t01 | Wine grape | mitochondrion | 48.46 | 48.81 |
GSMUA_Achr4P10350_001 | Banana | nucleus | 31.68 | 48.55 |
TraesCS1B01G146700.2 | Wheat | mitochondrion | 52.25 | 48.15 |
VIT_08s0056g00430.t01 | Wine grape | nucleus | 47.99 | 47.54 |
CDX84826 | Canola | plastid | 37.83 | 47.34 |
Bra022806.1-P | Field mustard | plastid | 37.59 | 47.32 |
Bra005657.1-P | Field mustard | mitochondrion | 17.49 | 47.13 |
AT5G01970.1 | Thale cress | mitochondrion, nucleus | 38.3 | 46.15 |
KRG98088 | Soybean | nucleus | 47.52 | 45.79 |
PGSC0003DMT400071236 | Potato | nucleus, plastid | 35.46 | 45.45 |
GSMUA_Achr1P24410_001 | Banana | nucleus | 45.39 | 45.39 |
Bra021640.1-P | Field mustard | nucleus | 22.22 | 45.19 |
KRH30689 | Soybean | nucleus | 45.39 | 45.07 |
AT2G30530.1 | Thale cress | nucleus | 39.48 | 45.01 |
Solyc10g074800.1.1 | Tomato | nucleus, plastid | 34.52 | 44.79 |
CDX90224 | Canola | nucleus | 36.64 | 43.91 |
CDY63845 | Canola | nucleus | 35.93 | 43.43 |
Bra010801.1-P | Field mustard | nucleus | 36.41 | 41.07 |
AT1G30050.1 | Thale cress | nucleus | 37.35 | 40.62 |
Bra032355.1-P | Field mustard | nucleus | 37.35 | 39.8 |
PGSC0003DMT400071259 | Potato | extracellular, golgi | 18.2 | 39.69 |
CDY26298 | Canola | nucleus | 37.35 | 39.6 |
CDX99879 | Canola | mitochondrion | 36.88 | 39.39 |
KRH40636 | Soybean | nucleus | 38.53 | 39.09 |
KRH64858 | Soybean | nucleus | 34.99 | 38.74 |
KRH00520 | Soybean | nucleus | 38.06 | 37.97 |
KRH09568 | Soybean | nucleus | 34.04 | 37.6 |
CDY11166 | Canola | cytosol | 13.71 | 36.71 |
CDY11165 | Canola | cytosol | 1.18 | 26.32 |
GSMUA_Achr8P13100_001 | Banana | nucleus | 19.39 | 24.85 |
Protein Annotations
EnsemblPlants:GSMUA_Achr3P09690_001 | EnsemblPlants:GSMUA_Achr3T09690_001 | EnsemblPlantsGene:GSMUA_Achr3G09690_001 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF3 |
SEG:seg | UniParc:UPI0002953690 | UniProt:M0SD86 | MapMan:20.2.4.4 | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G09690_001]
Coordinates
chr3:+:7027398..7033195
Molecular Weight (calculated)
47101.3 Da
IEP (calculated)
6.521
GRAVY (calculated)
-0.652
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRKQPAA RISTTFEDPR SAASAAEEQA SLATRAIRAS AAHRDASSLS SAYGESAVSS PHNESHRMRS SPPPQRDSES YEYISMKNLN ESKYGFWGTL
101: ARKAKSYVDN DDTNNQFQAL ERNPHQTFGR STVDRFHHVD PSPEIYQKTE TTHKRSDAIG SSLNHIGGTI KNAIEEGLTI VENKTANIIH ETRKLNIRRK
201: GNAATMQGQA AEKLGQEYIP QIQTEYETQL KASRDVANAM AAKAKLLLRE LKTVKADLIF TRERCAQLEE ENKMLRESHE KGDCPEDDDL IRLQLETLLV
301: EKARLAHENS IYARENRFLR EIVEYHQLTM QDVVYVDEGV EEVTEVYMTP NASLTLTRAA SEASTGFIST PLAPARTNSS PATLQPSLLP LPSIIVPEDC
401: PIVPMQPPLS VPTKSTLPPQ SAA
101: ARKAKSYVDN DDTNNQFQAL ERNPHQTFGR STVDRFHHVD PSPEIYQKTE TTHKRSDAIG SSLNHIGGTI KNAIEEGLTI VENKTANIIH ETRKLNIRRK
201: GNAATMQGQA AEKLGQEYIP QIQTEYETQL KASRDVANAM AAKAKLLLRE LKTVKADLIF TRERCAQLEE ENKMLRESHE KGDCPEDDDL IRLQLETLLV
301: EKARLAHENS IYARENRFLR EIVEYHQLTM QDVVYVDEGV EEVTEVYMTP NASLTLTRAA SEASTGFIST PLAPARTNSS PATLQPSLLP LPSIIVPEDC
401: PIVPMQPPLS VPTKSTLPPQ SAA
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
Arabidopsis Description
At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.