Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P10350_001 | Banana | nucleus | 33.33 | 51.09 |
| GSMUA_Achr3P09690_001 | Banana | mitochondrion | 45.39 | 45.39 |
| GSMUA_Achr8P21430_001 | Banana | mitochondrion | 46.57 | 43.2 |
| Os12t0118200-01 | Rice | nucleus | 23.64 | 40.0 |
| TraesCS4B01G122600.2 | Wheat | nucleus | 35.46 | 40.0 |
| TraesCS4D01G120600.1 | Wheat | nucleus | 35.46 | 40.0 |
| HORVU4Hr1G023340.2 | Barley | nucleus | 35.22 | 39.84 |
| TraesCS4A01G192700.1 | Wheat | nucleus | 34.99 | 39.47 |
| Os11t0118800-01 | Rice | nucleus | 34.28 | 38.98 |
| EES16589 | Sorghum | mitochondrion, nucleus | 33.81 | 38.75 |
| Zm00001d044674_P003 | Maize | mitochondrion, nucleus | 32.39 | 36.24 |
| GSMUA_Achr8P13100_001 | Banana | nucleus | 17.97 | 23.03 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P24410_001 | EnsemblPlants:GSMUA_Achr1T24410_001 | EnsemblPlantsGene:GSMUA_Achr1G24410_001 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF6 |
| SEG:seg | UniParc:UPI000295507F | UniProt:M0S2P8 | MapMan:20.2.4.4 | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_56.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr1G24410_001]
Coordinates
chr1:-:18804470..18809252
Molecular Weight (calculated)
46575.8 Da
IEP (calculated)
5.635
GRAVY (calculated)
-0.679
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRRHSTP RSATFEEFRS LSPEEDGSSS PSLAAKAIRA SAAHRESSLS SAYDGDSAAF SSSGWSSVFG SNVYEYSSLK NSNGPRHGFW EVLAKKAKAI
101: LEDDTVAQQF EDHDSNHSQI LDSSGSQSLD SYCKTENPTF QKDAIASSLR EFGGTIKNAF EEGISIMDNK TADIIHETKK LQLGTKTESS DTANQPMYTM
201: ASTNLAQNEA EYETQLKASQ KVANAMAAKA KLLLRELKTV KADMAFAKQR CAQLEEENKV LRENRQKGDN PADDDLIRHQ LETLLAEKAR LVHDNSVYER
301: ENLFLREIVE YHQLTMQDVV YLDEGIEEVT EVYPIHQIKT LSSPSRSAYE TSTPGISCSA TPRSNTMLSL SADTISAFGS LSSPKSPNRT FKVKKLTDAE
401: VNPSPSPAAE GSVQQHSPSP TPH
101: LEDDTVAQQF EDHDSNHSQI LDSSGSQSLD SYCKTENPTF QKDAIASSLR EFGGTIKNAF EEGISIMDNK TADIIHETKK LQLGTKTESS DTANQPMYTM
201: ASTNLAQNEA EYETQLKASQ KVANAMAAKA KLLLRELKTV KADMAFAKQR CAQLEEENKV LRENRQKGDN PADDDLIRHQ LETLLAEKAR LVHDNSVYER
301: ENLFLREIVE YHQLTMQDVV YLDEGIEEVT EVYPIHQIKT LSSPSRSAYE TSTPGISCSA TPRSNTMLSL SADTISAFGS LSSPKSPNRT FKVKKLTDAE
401: VNPSPSPAAE GSVQQHSPSP TPH
001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
Arabidopsis Description
Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.