Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16589 | Sorghum | mitochondrion, nucleus | 78.84 | 80.76 |
| Os12t0118200-01 | Rice | nucleus | 45.77 | 69.2 |
| Os11t0118800-01 | Rice | nucleus | 62.7 | 63.71 |
| HORVU4Hr1G023340.2 | Barley | nucleus | 55.56 | 56.15 |
| TraesCS4B01G122600.2 | Wheat | nucleus | 55.56 | 56.0 |
| TraesCS4D01G120600.1 | Wheat | nucleus | 53.17 | 53.6 |
| TraesCS4A01G192700.1 | Wheat | nucleus | 52.12 | 52.53 |
| GSMUA_Achr4P10350_001 | Banana | nucleus | 29.63 | 40.58 |
| Zm00001d010455_P013 | Maize | plastid | 39.42 | 39.84 |
| GSMUA_Achr1P24410_001 | Banana | nucleus | 36.24 | 32.39 |
| Zm00001d038509_P001 | Maize | mitochondrion | 35.71 | 25.38 |
| Zm00001d010623_P001 | Maize | plastid | 32.8 | 25.15 |
| Zm00001d004133_P001 | Maize | cytosol | 20.63 | 24.15 |
Protein Annotations
| EnsemblPlants:Zm00001d044674_P003 | EnsemblPlants:Zm00001d044674_T003 | EnsemblPlantsGene:Zm00001d044674 | EntrezGene:100275413 | ncoils:Coil | PANTHER:PTHR31016 |
| PANTHER:PTHR31016:SF5 | ProteinID:ONM42247.1 | SEG:seg | UniParc:UPI000842FCFA | UniProt:A0A1D6NQN9 | MapMan:20.2.4.4 |
Description
Whole genome shotgun sequence of line PN40024 scaffold_56.assembly12x (Fragment)
Coordinates
chr3:+:234623184..234626205
Molecular Weight (calculated)
41516.0 Da
IEP (calculated)
5.259
GRAVY (calculated)
-0.775
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRKQGVA AADHRSSYPQ DSASSHGYTS FKSIDEPKLG LWRTLATRAK GILDEDGLAH KFEDLRKERP RSDATASSKD QAPNSRWSFE NHWKAGDAAS
101: RIRPEALSAS VNQLSGKIKN ALEEGLTIVD NKTSSIIEET KKIQIRRKPA GSSPHVPNSA VDKHTLSTPD LSLRQPESAA QETGLKASRD VSITFASVAN
201: AMAAKAKLVL RELKSVKADL AFAKQRCAQL EEENRLLRET KQKGSKTEED DDLIRVQLET LLSEKSRLAQ ENSTYARENR FLREIVDFHQ FTTHDVVSLD
301: DGDMEGTEPE EDDDNDNGLI CAENVLPAVE ENPVDEEHCP VPSKLESPVA SLGEPSSSPR SSDCHSASKP DASASDVA
101: RIRPEALSAS VNQLSGKIKN ALEEGLTIVD NKTSSIIEET KKIQIRRKPA GSSPHVPNSA VDKHTLSTPD LSLRQPESAA QETGLKASRD VSITFASVAN
201: AMAAKAKLVL RELKSVKADL AFAKQRCAQL EEENRLLRET KQKGSKTEED DDLIRVQLET LLSEKSRLAQ ENSTYARENR FLREIVDFHQ FTTHDVVSLD
301: DGDMEGTEPE EDDDNDNGLI CAENVLPAVE ENPVDEEHCP VPSKLESPVA SLGEPSSSPR SSDCHSASKP DASASDVA
001: MAYRRRQGIG KFATFKEEVD RLPPESITAV KDRSPPARSS PAFDQPRSKN FTTEPKGLWG VIAQKAKSVI EDDKSSDRST TASQSRFSYL SDEGFKKMDN
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
101: PKLRRGLDKL TSSLNQIGDT FEKAFEDGRT LVENKTADII QETRKLQTRR RGTGGEDENQ NQSYGVSSSW KKSPEQPMQL NHIEHETQLK ASRDVAMATA
201: AKAKLLLREL KTVKADLAFA KERCAQLEEE NKHLRESHRE KGSNPADEDL IRLQLESLLA EKARLAHENS VYARENRFLR EIVEYHQLTM QDVVYIDEGS
301: EEVTQVSPFV STLMTSSPAD RSQSPPSQEM IKEMLVVAEE SSVCASVVSV S
Arabidopsis Description
Heat-inducible transcription repressor [Source:UniProtKB/TrEMBL;Acc:Q9LZN4]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.