Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G120600.1 | Wheat | nucleus | 97.6 | 97.6 |
| TraesCS4B01G122600.2 | Wheat | nucleus | 89.87 | 89.87 |
| HORVU4Hr1G023340.2 | Barley | nucleus | 85.07 | 85.29 |
| Os11t0118800-01 | Rice | nucleus | 61.33 | 61.83 |
| Os12t0118200-01 | Rice | nucleus | 39.47 | 59.2 |
| EES16589 | Sorghum | mitochondrion, nucleus | 54.4 | 55.28 |
| Zm00001d044674_P003 | Maize | mitochondrion, nucleus | 52.53 | 52.12 |
| GSMUA_Achr4P10350_001 | Banana | nucleus | 31.47 | 42.75 |
| GSMUA_Achr1P24410_001 | Banana | nucleus | 39.47 | 34.99 |
| TraesCS1A01G128300.1 | Wheat | cytosol, plastid | 40.0 | 34.64 |
| TraesCS2A01G067400.1 | Wheat | cytosol | 20.53 | 23.91 |
| TraesCS1A01G303000.2 | Wheat | nucleus | 35.73 | 23.51 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G192700.1 | EnsemblPlantsGene:TraesCS4A01G192700 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF5 | MapMan:20.2.4.4 |
Description
No Description!
Coordinates
chr4A:+:473686557..473689766
Molecular Weight (calculated)
41747.1 Da
IEP (calculated)
7.707
GRAVY (calculated)
-0.753
Length
375 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRKQQGP VASDDRRTPQ PQSLAASSYN YTSMDSMREP KVGLWGALAR KAKGILDEDA AAHKFDDHGK VQSATRKPNL SDGAQAPQSR WSFDSYGGTE
101: RSEPWKRSEA LATSVNQFGG RIRNALEEGL IIVDNKTSNI IEETKKIQIR RKPNSSSLHM QNPAADAFPP PSFTLNKAEA AQETQLKASR DVANVMAAKA
201: KLVLRELKTV KADLAFAKQR CTQLEEENKM LRGTKQKGVK IEEDDDLIRM QLETLLAEKS RLAQENSMYA RENRFLREIV DFHQFAAHNI VSFGDGNMKD
301: SKLEEDTNRA YTENMFPVVE AYLAQEEVSP VPSRPDSPIL SPGESSSPVS IISVDNAANS PRNALKPNEL VPDKD
101: RSEPWKRSEA LATSVNQFGG RIRNALEEGL IIVDNKTSNI IEETKKIQIR RKPNSSSLHM QNPAADAFPP PSFTLNKAEA AQETQLKASR DVANVMAAKA
201: KLVLRELKTV KADLAFAKQR CTQLEEENKM LRGTKQKGVK IEEDDDLIRM QLETLLAEKS RLAQENSMYA RENRFLREIV DFHQFAAHNI VSFGDGNMKD
301: SKLEEDTNRA YTENMFPVVE AYLAQEEVSP VPSRPDSPIL SPGESSSPVS IISVDNAANS PRNALKPNEL VPDKD
001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV
Arabidopsis Description
Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.