Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os11t0118800-01 | Rice | nucleus | 96.0 | 64.52 |
| EES16589 | Sorghum | mitochondrion, nucleus | 70.4 | 47.7 |
| Zm00001d044674_P003 | Maize | mitochondrion, nucleus | 69.2 | 45.77 |
| TraesCS4B01G122600.2 | Wheat | nucleus | 66.0 | 44.0 |
| HORVU4Hr1G023340.2 | Barley | nucleus | 65.6 | 43.85 |
| TraesCS4D01G120600.1 | Wheat | nucleus | 60.4 | 40.27 |
| TraesCS4A01G192700.1 | Wheat | nucleus | 59.2 | 39.47 |
| Os05t0315200-01 | Rice | plasma membrane | 46.4 | 27.68 |
| GSMUA_Achr4P10350_001 | Banana | nucleus | 28.8 | 26.09 |
| GSMUA_Achr1P24410_001 | Banana | nucleus | 40.0 | 23.64 |
| Os04t0228100-01 | Rice | nucleus | 20.4 | 16.04 |
Protein Annotations
| EMBL:AK066991 | EnsemblPlants:Os12t0118200-01 | EnsemblPlantsGene:Os12g0118200 | ncoils:Coil | PANTHER:PTHR31016 | PANTHER:PTHR31016:SF5 |
| ProteinID:ABA95653.1 | ProteinID:BAF29025.1 | ProteinID:BAT15628.1 | SEG:seg | UniParc:UPI0000681B59 | UniProt:Q2QYI4 |
| MapMan:20.2.4.4 | : | : | : | : | : |
Description
Conserved hypothetical protein. (Os12t0118200-01)
Coordinates
chr12:-:887161..890817
Molecular Weight (calculated)
27914.5 Da
IEP (calculated)
9.803
GRAVY (calculated)
-1.023
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRRKQGPI AADDRRSSYP QPPQGSSSSY SYTSIKSMNE PKLGLWETLA RKAKGILDED GTAHKSDEYT KQKTPRKFDS STGAQESRSR WSFENHSRTG
101: DTGSRTRSEA LAASVNQLGG RIRDALEEGL TIVDNKTSNI IEETKKIQIR RKQANSNSYM PNPAFDTLRP PNLSHDQAET AAQETQLKAS RDVANAMAAK
201: AKLVLRELKT VKADLAFAKQ RCAQLEEENK FLREAKQKGS KTEEDDDLVC
101: DTGSRTRSEA LAASVNQLGG RIRDALEEGL TIVDNKTSNI IEETKKIQIR RKQANSNSYM PNPAFDTLRP PNLSHDQAET AAQETQLKAS RDVANAMAAK
201: AKLVLRELKT VKADLAFAKQ RCAQLEEENK FLREAKQKGS KTEEDDDLVC
001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K
Arabidopsis Description
At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.