Factsheet for Os05t0315200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0315200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G30530.1	Os05t0315200-01	AT5G01970.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d010455_P013	Maize	plastid	68.02	76.2
TraesCS1D01G124900.2	Wheat	nucleus	75.89	73.44
TraesCS1A01G128300.1	Wheat	cytosol, plastid	75.66	73.21
OQU77734	Sorghum	nucleus, plastid	51.07	73.04
Solyc09g055670.1.1	Tomato	cytosol	10.74	72.58
TraesCS1B01G146700.2	Wheat	mitochondrion	75.66	69.06
Solyc09g055590.2.1	Tomato	nucleus	26.49	58.42
PGSC0003DMT400096244	Potato	mitochondrion	31.26	55.04
GSMUA_Achr3P09690_001	Banana	mitochondrion	55.37	54.85
CDX98180	Canola	mitochondrion	23.39	54.14
GSMUA_Achr8P21430_001	Banana	mitochondrion	57.52	52.85
CDY23991	Canola	plastid	40.33	52.65
Bra022806.1-P	Field mustard	plastid	40.81	50.89
VIT_06s0004g08310.t01	Wine grape	mitochondrion	50.84	50.71
AT2G30530.1	Thale cress	nucleus	44.87	50.67
Bra005657.1-P	Field mustard	mitochondrion	18.85	50.32
CDY29667	Canola	cytosol	13.84	50.0
CDX84826	Canola	plastid	40.33	50.0
VIT_08s0056g00430.t01	Wine grape	nucleus	50.84	49.88
PGSC0003DMT400071236	Potato	nucleus, plastid	38.19	48.48
AT5G01970.1	Thale cress	mitochondrion, nucleus	39.86	47.58
Solyc10g074800.1.1	Tomato	nucleus, plastid	36.99	47.55
KRH30689	Soybean	nucleus	47.49	46.71
Bra021640.1-P	Field mustard	nucleus	23.15	46.63
Os12t0118200-01	Rice	nucleus	27.68	46.4
CDX90224	Canola	nucleus	37.95	45.04
KRG98088	Soybean	nucleus	46.78	44.65
CDY63845	Canola	nucleus	37.23	44.57
Os11t0118800-01	Rice	nucleus	39.14	44.09
AT1G30050.1	Thale cress	nucleus	40.81	43.96
Bra010801.1-P	Field mustard	nucleus	38.66	43.2
CDY26298	Canola	nucleus	39.86	41.85
Bra032355.1-P	Field mustard	nucleus	39.62	41.81
KRH40636	Soybean	nucleus	41.53	41.73
CDX99879	Canola	mitochondrion	39.14	41.41
CDY11166	Canola	cytosol	15.27	40.51
KRH00520	Soybean	nucleus	40.81	40.33
PGSC0003DMT400071259	Potato	extracellular, golgi	18.62	40.21
KRH64858	Soybean	nucleus	36.04	39.53
KRH09568	Soybean	nucleus	34.37	37.6
CDY11165	Canola	cytosol	1.67	36.84
Os04t0228100-01	Rice	nucleus	19.81	26.1

Protein Annotations

EMBL:AK071944	EMBL:AK105270	EnsemblPlants:Os05t0315200-01	EnsemblPlantsGene:Os05g0315200	EntrezGene:4338389	ncoils:Coil
PANTHER:PTHR31016	PANTHER:PTHR31016:SF6	ProteinID:AAV32154.1	ProteinID:AAV32156.1	ProteinID:BAF17085.1	ProteinID:BAS93318.1
RefSeq:XP_015639779.1	SEG:seg	UniParc:UPI00004508F6	UniProt:Q5WMS9	MapMan:20.2.4.4	:

Description

Conserved hypothetical protein. (Os05t0315200-01)

Coordinates

chr5:+:14510348..14514230

Molecular Weight (calculated)

45569.0 Da

IEP (calculated)

8.873

GRAVY (calculated)

-0.779

Length

419 amino acids

Sequence
(BLAST)

001: MAYRRKPQPP QTPPSLDHHH HHHTPSVGPS SPPQDSLAAQ AMRASAAHRD ASSLSSAYSS SSASAAAAAA AARRGHHEPS VSTPSPGSSG YEYTSMKNLN
101: EAKYGFWGAL ARKAKSFLDE DGSPGQYDSP ARQQPSRDAP PVGVQYTRSQ QPPSETWKSE TPPSHKRSEA IASSLNYIGG TIKSALEEGR TIVENKTADI
201: IHETRKLNIR RKGAGSTTQG EAPQRFTQRN LPQNPLDYET QLKASRDVAN AMAAKAKLLL RELKTVKADL AFAKERCAQL EDENKILRES HDKGDNPEDD
301: DLIRLQLETL LAEKARLAHE NSVYARENRF LREIVEYHQL TMQDVIYVDE GIEEVTEVYP TQVLPPAPSR AGSGLGRSVT PATPKTASSS PSSTSIVVPE
401: TCPVVPASPK SLSRTSSKQ

Best Arabidopsis Sequence Match ( AT2G30530.1 )
(BLAST)

001: MNKVDEIEDF RFEDLEMETE KDKERMMTPT TRMSYSSSSS PSPSSASSSA ASSLAAKAIR ASSAHRDSSL SSAYSSPSSA PVPTPPKEVN KAYEYTSMKS
101: LNEPKRGFWG SLASKAKAFL DEDDPNQLPQ SPKRMEQSIP SATTSGTKEA GQTGRKSENP SLQRRLDAIT SSLNYIGGTI GTVVEEGITA VENRTAGIIQ
201: ETRKKIKKKP SLTRNQQNPE IQADLEIQLK ASRDVAMAMA AKAKLLLREL KMVKSDLAFA KQRCAQLEEE NKVLRENRSG DSQTDDDDLV RLQLETLLAE
301: KARLAHENSI YTRENLYLRG VVEYHQLTMQ DVVYFDEKTE EVTEVYPINV SSMSSSSDNS YNPNPSFLEL K

Arabidopsis Description

At2g30530/T6B20.12 [Source:UniProtKB/TrEMBL;Acc:O04342]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.