Factsheet for Bra032355.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26298	Canola	nucleus	96.98	96.49
Bra010801.1-P	Field mustard	nucleus	73.8	78.13
AT1G30050.1	Thale cress	nucleus	73.55	75.06
Solyc09g055670.1.1	Tomato	cytosol	11.08	70.97
PGSC0003DMT400096244	Potato	mitochondrion	31.49	52.52
Solyc10g074800.1.1	Tomato	nucleus, plastid	41.06	50.0
PGSC0003DMT400071236	Potato	nucleus, plastid	41.31	49.7
Bra005657.1-P	Field mustard	mitochondrion	18.89	47.77
VIT_08s0056g00430.t01	Wine grape	nucleus	48.36	44.96
KRH40636	Soybean	nucleus	46.85	44.6
Bra021640.1-P	Field mustard	nucleus	22.92	43.75
KRH00520	Soybean	nucleus	46.6	43.63
Bra022806.1-P	Field mustard	plastid	36.78	43.45
Zm00001d010455_P013	Maize	plastid	40.81	43.32
KRH64858	Soybean	nucleus	39.29	40.84
PGSC0003DMT400071259	Potato	extracellular, golgi	19.65	40.21
Os05t0315200-01	Rice	plasma membrane	41.81	39.62
KRH09568	Soybean	nucleus	37.28	38.64
GSMUA_Achr3P09690_001	Banana	mitochondrion	39.8	37.35
TraesCS1D01G124900.2	Wheat	nucleus	40.05	36.72
OQU77734	Sorghum	nucleus, plastid	26.7	36.18
TraesCS1A01G128300.1	Wheat	cytosol, plastid	39.29	36.03
GSMUA_Achr8P21430_001	Banana	mitochondrion	41.06	35.75
TraesCS1B01G146700.2	Wheat	mitochondrion	40.3	34.86
Bra000862.1-P	Field mustard	nucleus, plastid	19.65	23.78

Protein Annotations

EnsemblPlants:Bra032355.1	EnsemblPlants:Bra032355.1-P	EnsemblPlantsGene:Bra032355	ncoils:Coil	PANTHER:PTHR31016	PANTHER:PTHR31016:SF6
SEG:seg	UniParc:UPI00025425D0	UniProt:M4EU73	MapMan:20.2.4.4	:	:

Description

AT1G30050 (E=6e-122) | unknown protein

Coordinates

chrA09:-:22288312..22289575

Molecular Weight (calculated)

43965.8 Da

IEP (calculated)

5.528

GRAVY (calculated)

-0.759

Length

397 amino acids

Sequence
(BLAST)

001: MAYRRRQGVT RASTFNDDIY HQTPDLDYGD LKGHSNGKSS FRSSQSFSSH SSLAAQAIRA SSSLNPNSNS EVRGFTAYED ASKSESRGFW GILAQKAKSI
101: LEDEEEEQQN VVVSEPSSNN NSNPTIRKSI DKITTSLNQI GDSFEKAFEE GRTMVASQIR RKGSDLMDIP ENHNQSSGSN SPWQPLTQPN PHESQLKASR
201: DVAMATAAKA KLLLRELKTV KADQAFAKQR CSQLEEENKR LRDNREKGTN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV
301: VYIDEGIEEV AEVNPSITRT LSMASFAASE FPVNSSSPLS PSSPSRLSVS TDVYPVLVQQ SSASDVGGSA DESPRPVRPP SLGYTDDIKR SLSQMSV

Best Arabidopsis Sequence Match ( AT1G30050.1 )
(BLAST)

001: MAYRRRQGIT RASTFKEDIY HQPPDPDHGD LKGHSNGGSF RSSQSFSSHS SLAAQAIRAS SQAQGFTAYE DKSESRGFWG ILAQKAKSIL EDEEEQQQQQ
101: QQQNDVIFEP SNPTIRKSID KITTSLNHIG DSFEKAFEEG RTIVASQIRR KGSDLIDSDN NNYHQSSGSS SPWQPLTQPN PRESQLKASR DVAMATAAKA
201: KLLLRELKTV KADLAFAKER CSQLEEENKR LRDNRDKGNN NPADDDLIRL QLETLLAEKA RLAHENSIYA RENRFLREIV EYHQLTMQDV VYIDEGIEEV
301: AEVNPSITRT LSMASYSASE LPSISPSPSS PASPSRLSVS TDIYPILVQQ SSTNDITVES PKPVRPPSLG YTDDGKRPSS QLPSSQLSV

Arabidopsis Description

Tropomyosin [Source:UniProtKB/TrEMBL;Acc:Q9C8R6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.